Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0146
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    50   8e-07
AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical...    31   0.41 
AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical...    31   0.41 
AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical...    31   0.41 
AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical...    31   0.41 
Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    27   8.9  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 26/62 (41%), Positives = 33/62 (53%)
 Frame = +3

Query: 3   QFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRL 182
           QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V LRR+
Sbjct: 5   QFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFLRRV 64

Query: 183 FS 188
            +
Sbjct: 65  LA 66



 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +2

Query: 233 DSAQRTIVLTLQMDLSQY---LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQ 403
           ++ QR +   L+M + +    +++K+ D++SE+A N IDD G+  W   L+ M  C  ++
Sbjct: 79  ENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSE 138

Query: 404 DPNIKEAGIRMFTSVPGVFGN 466
           D       + +    P +FGN
Sbjct: 139 DLTGNYIALLILRGCPIIFGN 159


>AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1d protein.
          Length = 354

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -2

Query: 314 RLHHKPFFVSTGKDPFEG*VQLFSEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 150
           RL+  P  VS  K  F    +  +E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199

Query: 149 HIF 141
           H+F
Sbjct: 200 HMF 202


>AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1b protein.
          Length = 483

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -2

Query: 314 RLHHKPFFVSTGKDPFEG*VQLFSEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 150
           RL+  P  VS  K  F    +  +E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 140 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 199

Query: 149 HIF 141
           H+F
Sbjct: 200 HMF 202


>AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1c protein.
          Length = 488

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -2

Query: 314 RLHHKPFFVSTGKDPFEG*VQLFSEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 150
           RL+  P  VS  K  F    +  +E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 145 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 204

Query: 149 HIF 141
           H+F
Sbjct: 205 HMF 207


>AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1a protein.
          Length = 486

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -2

Query: 314 RLHHKPFFVSTGKDPFEG*VQLFSEHCLL-----LKWQFREELKEFCTK*SS*QHGRRLT 150
           RL+  P  VS  K  F    +  +E CL+      KW  ++     CT+ +  QH RRL 
Sbjct: 143 RLYSLPKTVSINKLVFSNTPECEAEDCLIELMFIKKWTCKQLDYNICTEFNQPQHLRRLV 202

Query: 149 HIF 141
           H+F
Sbjct: 203 HMF 205


>Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical
           protein F07D3.3 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 39  DNDIRSQAEDAYNNIPTETKVVHLVNSIQNAD 134
           D D   QA    NNIP E  V+H+  S +  D
Sbjct: 149 DQDECMQAVQELNNIPVEDSVIHMTISTRFID 180


>U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical
           protein F42C5.3 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 5   ILSVAKYFTFNR**YQIPSRGRIQQHSNRNKSSAPSEFNS 124
           +L V+K +T  +  YQ   R  + +HSN NKS    E ++
Sbjct: 108 LLDVSKVWTDVKVNYQDYLRNTLDEHSNSNKSDVLKEIDT 147


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +2

Query: 272  DLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSV 448
            D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R   S+
Sbjct: 1129 DREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADRAADSI 1187


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 110 SEFNSKCRHCR--RCASNGGRA 169
           SEF S CRHCR  +C   G +A
Sbjct: 116 SEFRSTCRHCRFKKCFDVGMKA 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,697,617
Number of Sequences: 27780
Number of extensions: 207211
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)