Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0145
         (537 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           22   3.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.1  

>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 402 AVQAKQTRRLDAIQDKLDRV 461
           A  A++ RR++++ D  DR+
Sbjct: 1   AANARERRRMNSLNDAFDRL 20


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 190 SCYCFIGTVFLLFHRYYLTSRRFL 119
           +C CF+  V  L  R    S+RFL
Sbjct: 202 NCICFVPGVLGLLSRSNKESQRFL 225


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 190 SCYCFIGTVFLLFHRYYLTSRRFL 119
           +C CF+  V  L  R    S+RFL
Sbjct: 202 NCICFVPGVLGLLSRSNKESQRFL 225


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 190 SCYCFIGTVFLLFHRYYLTSRRFL 119
           +C CF+  V  L  R    S+RFL
Sbjct: 202 NCICFVPGVLGLLSRSNKESQRFL 225


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 190 SCYCFIGTVFLLFHRYYLTSRRFL 119
           +C CF+  V  L  R    S+RFL
Sbjct: 202 NCICFVPGVLGLLSRSNKESQRFL 225


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 196 LNLRAWNIPIDRAMLSVAGACWRAFVWRAPHRPSLTIFVSTHQIRTA 336
           LNL A  IP     + + G  +   ++       LT+ V  +  RTA
Sbjct: 257 LNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHHRTA 303


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 196 LNLRAWNIPIDRAMLSVAGACWRAFVWRAPHRPSLTIFVSTHQIRTA 336
           LNL A  IP     + + G  +   ++       LT+ V  +  RTA
Sbjct: 257 LNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHHRTA 303


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 149 PVLFNFATVSEHVLRVGTRSRYTRATRCGCRSMPQRLCFECR 24
           P+LF +    ++  R GT     R  R   R   + L   CR
Sbjct: 231 PLLFTYTDDGKNQQRTGTELTKMRPKRQSSRRHRKNLKDPCR 272


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 526 SLCSKSSAASCTLSNFKDRVVSTRSN 449
           ++C +    S  + NF D   S RSN
Sbjct: 402 NVCFRPRNNSILIKNFNDSPESNRSN 427


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 384 HATALQCWLEC 352
           +A  L CW EC
Sbjct: 724 YAVMLNCWKEC 734


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,442
Number of Sequences: 336
Number of extensions: 2431
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)