BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0145 (537 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 29 0.33 SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 29 0.58 SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 28 0.77 SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 1.3 SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 1.3 SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc... 27 1.8 SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 3.1 SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 3.1 SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 26 4.1 SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 5.4 SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 5.4 SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.4 SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 7.2 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.5 >SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1|||Manual Length = 121 Score = 29.5 bits (63), Expect = 0.33 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Frame = +3 Query: 288 PAEPYNLRVYSPNTHSSTDTNSILASIEERLR-----VLETVSAVQAKQTRRLDAIQDKL 452 PAEP + V S N +S+ N A+I++++ + E +S V +++ RLD++QDK Sbjct: 10 PAEP-SAAVRSGNAAASSTPNMKTAAIQQQIDDTVGIMRENISKV-SERGERLDSLQDKT 67 Query: 453 DRV 461 D + Sbjct: 68 DNL 70 >SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 286 Score = 28.7 bits (61), Expect = 0.58 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = +3 Query: 309 RVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLE 488 R S N + + D N++ A E ++LE + K + R + QD+LD L L Sbjct: 99 RAPSQNAYEA-DKNALDAKFLEAHKILENLDEQTRKLSERTEKQQDELDIALDDLEETLN 157 Query: 489 RVQLAAEDLEHRLSHV 536 ++ +E+ + ++ + Sbjct: 158 TLKRTSENRDREIARI 173 >SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 28.3 bits (60), Expect = 0.77 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 315 RHEDCKARPVRCAPNKGTPARPSH 244 R +D K RP R A + P+RPSH Sbjct: 130 RSKDPKVRPARRAASSYVPSRPSH 153 >SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor Ste6|Schizosaccharomyces pombe|chr 3|||Manual Length = 911 Score = 27.5 bits (58), Expect = 1.3 Identities = 9/29 (31%), Positives = 14/29 (48%) Frame = -3 Query: 187 CYCFIGTVFLLFHRYYLTSRRFLSTCFVW 101 C G + + H +Y S+RFL +W Sbjct: 544 CSLNFGKISFISHEFYRVSKRFLDILLIW 572 >SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharomyces pombe|chr 1|||Manual Length = 461 Score = 27.5 bits (58), Expect = 1.3 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 384 VLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHR 524 VL TV +Q+ T D QD++D + ++LK ER+Q + R Sbjct: 159 VLATVDQLQSLVTNFNDQ-QDEVDELRERITLKEERIQQMRNEASQR 204 >SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosaccharomyces pombe|chr 3|||Manual Length = 94 Score = 27.1 bits (57), Expect = 1.8 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = +3 Query: 276 ARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKL 452 +RTS + P ++ S + D S L S L V+A+QA+ RRL A+Q L Sbjct: 10 SRTSSSSPSPSQMKSFQMNRLVDQLSKLQSNMSHLENHLHVTAIQAEAIRRLGALQASL 68 >SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 26.2 bits (55), Expect = 3.1 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Frame = -2 Query: 281 ARQTKARQHAPATLNIALSIGIFQARRXSPFLLLFY---WHCFFVISP 147 ARQ + RQ+ T + I A S ++LLFY CF + P Sbjct: 247 ARQKQQRQYLTETFVKDCTSSILTASSDSSYILLFYVSTIRCFVALDP 294 >SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2|||Manual Length = 479 Score = 26.2 bits (55), Expect = 3.1 Identities = 21/63 (33%), Positives = 31/63 (49%) Frame = +3 Query: 318 SPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQ 497 SP T +S D N + SIE R + +S RR+ I+D L E L +++VQ Sbjct: 134 SPGTDTS-DANLTIQSIEAPRRAPQRLSDFFTPDGRRVSNIRDSLIS-EKRLENNIDQVQ 191 Query: 498 LAA 506 +A Sbjct: 192 ESA 194 >SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizosaccharomyces pombe|chr 1|||Manual Length = 801 Score = 25.8 bits (54), Expect = 4.1 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +3 Query: 363 SIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRL 527 S+E RL + ET+SA QAK +L I + T K+E +++ ED ++ L Sbjct: 443 SVEGRL-IRETLSA-QAKFVEKLLRISKSVQSFRGTRLKKIEYLKVLLEDHKYHL 495 >SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 25.4 bits (53), Expect = 5.4 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +3 Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAA 506 EE L L+T V+ K+T R+D+ + + +T+ L E+++L A Sbjct: 71 EEHLDTLQTNGLVRLKETIRMDSQSE----ISSTMGLVGEKMELDA 112 >SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 744 Score = 25.4 bits (53), Expect = 5.4 Identities = 18/69 (26%), Positives = 30/69 (43%) Frame = +3 Query: 288 PAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVET 467 P EP + N + +L +IE+ +L K + Q+++D +T Sbjct: 434 PTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQALRKASTLETTDQEQIDTWKT 493 Query: 468 TLSLKLERV 494 TLS KLE + Sbjct: 494 TLSEKLESI 502 >SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 700 Score = 25.4 bits (53), Expect = 5.4 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Frame = +3 Query: 273 LARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLE-TVSAVQAKQ---TRRLDAI 440 L E NL + + N D + ++++ R L+ V ++ K+ T +++ + Sbjct: 468 LTNADNLEKENLLLVNNNAFKVDDRSVSSVALDDHNRQLQMNVEELEGKKADLTSKINRL 527 Query: 441 QDKLDRVETTLSLKLERV---QLAAEDLEHRL 527 ++ TT SL ++V QLA +++E R+ Sbjct: 528 DKDFVKLNTTYSLLTDQVKTKQLALQEIESRV 559 >SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Schizosaccharomyces pombe|chr 1|||Manual Length = 577 Score = 25.0 bits (52), Expect = 7.2 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +3 Query: 237 VKCGWGVLACLCLARTSPAEPYN--LRVYSPNTHSSTDTN 350 V C + ++ CL +AR + YN + +Y + TD N Sbjct: 378 VLCVYAIIGCLSIARILAIQNYNAPMIIYPAISFLETDNN 417 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 24.6 bits (51), Expect = 9.5 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 73 VARVYRERVPTRSTCSETVAKLNNTGEITK 162 VA RER+ +T +TVAK N G +T+ Sbjct: 776 VAHFNRERIRRGATVDKTVAK-KNLGRLTR 804 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,060,738 Number of Sequences: 5004 Number of extensions: 40355 Number of successful extensions: 116 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 222442660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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