Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0145
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 29 0.33
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 29 0.58
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 28 0.77
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 1.3
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 1.3
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc... 27 1.8
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 3.1
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 3.1
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 26 4.1
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 5.4
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 5.4
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.4
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 7.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.5
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.5 bits (63), Expect = 0.33
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3
Query: 288 PAEPYNLRVYSPNTHSSTDTNSILASIEERLR-----VLETVSAVQAKQTRRLDAIQDKL 452
PAEP + V S N +S+ N A+I++++ + E +S V +++ RLD++QDK
Sbjct: 10 PAEP-SAAVRSGNAAASSTPNMKTAAIQQQIDDTVGIMRENISKV-SERGERLDSLQDKT 67
Query: 453 DRV 461
D +
Sbjct: 68 DNL 70
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +3
Query: 309 RVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLE 488
R S N + + D N++ A E ++LE + K + R + QD+LD L L
Sbjct: 99 RAPSQNAYEA-DKNALDAKFLEAHKILENLDEQTRKLSERTEKQQDELDIALDDLEETLN 157
Query: 489 RVQLAAEDLEHRLSHV 536
++ +E+ + ++ +
Sbjct: 158 TLKRTSENRDREIARI 173
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 28.3 bits (60), Expect = 0.77
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 315 RHEDCKARPVRCAPNKGTPARPSH 244
R +D K RP R A + P+RPSH
Sbjct: 130 RSKDPKVRPARRAASSYVPSRPSH 153
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -3
Query: 187 CYCFIGTVFLLFHRYYLTSRRFLSTCFVW 101
C G + + H +Y S+RFL +W
Sbjct: 544 CSLNFGKISFISHEFYRVSKRFLDILLIW 572
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 384 VLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHR 524
VL TV +Q+ T D QD++D + ++LK ER+Q + R
Sbjct: 159 VLATVDQLQSLVTNFNDQ-QDEVDELRERITLKEERIQQMRNEASQR 204
>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
Dad5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 276 ARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKL 452
+RTS + P ++ S + D S L S L V+A+QA+ RRL A+Q L
Sbjct: 10 SRTSSSSPSPSQMKSFQMNRLVDQLSKLQSNMSHLENHLHVTAIQAEAIRRLGALQASL 68
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -2
Query: 281 ARQTKARQHAPATLNIALSIGIFQARRXSPFLLLFY---WHCFFVISP 147
ARQ + RQ+ T + I A S ++LLFY CF + P
Sbjct: 247 ARQKQQRQYLTETFVKDCTSSILTASSDSSYILLFYVSTIRCFVALDP 294
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 318 SPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQ 497
SP T +S D N + SIE R + +S RR+ I+D L E L +++VQ
Sbjct: 134 SPGTDTS-DANLTIQSIEAPRRAPQRLSDFFTPDGRRVSNIRDSLIS-EKRLENNIDQVQ 191
Query: 498 LAA 506
+A
Sbjct: 192 ESA 194
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 363 SIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRL 527
S+E RL + ET+SA QAK +L I + T K+E +++ ED ++ L
Sbjct: 443 SVEGRL-IRETLSA-QAKFVEKLLRISKSVQSFRGTRLKKIEYLKVLLEDHKYHL 495
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAA 506
EE L L+T V+ K+T R+D+ + + +T+ L E+++L A
Sbjct: 71 EEHLDTLQTNGLVRLKETIRMDSQSE----ISSTMGLVGEKMELDA 112
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 288 PAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVET 467
P EP + N + +L +IE+ +L K + Q+++D +T
Sbjct: 434 PTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQALRKASTLETTDQEQIDTWKT 493
Query: 468 TLSLKLERV 494
TLS KLE +
Sbjct: 494 TLSEKLESI 502
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 5.4
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +3
Query: 273 LARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLE-TVSAVQAKQ---TRRLDAI 440
L E NL + + N D + ++++ R L+ V ++ K+ T +++ +
Sbjct: 468 LTNADNLEKENLLLVNNNAFKVDDRSVSSVALDDHNRQLQMNVEELEGKKADLTSKINRL 527
Query: 441 QDKLDRVETTLSLKLERV---QLAAEDLEHRL 527
++ TT SL ++V QLA +++E R+
Sbjct: 528 DKDFVKLNTTYSLLTDQVKTKQLALQEIESRV 559
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 237 VKCGWGVLACLCLARTSPAEPYN--LRVYSPNTHSSTDTN 350
V C + ++ CL +AR + YN + +Y + TD N
Sbjct: 378 VLCVYAIIGCLSIARILAIQNYNAPMIIYPAISFLETDNN 417
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 73 VARVYRERVPTRSTCSETVAKLNNTGEITK 162
VA RER+ +T +TVAK N G +T+
Sbjct: 776 VAHFNRERIRRGATVDKTVAK-KNLGRLTR 804
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,738
Number of Sequences: 5004
Number of extensions: 40355
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -