Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0145
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 34 0.083
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 29 1.8
05_05_0207 + 23272777-23272977,23273831-23275330 29 1.8
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 29 2.3
07_03_0811 - 21688781-21689830 29 2.3
02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024... 29 2.3
03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705... 28 4.1
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 28 4.1
02_02_0642 + 12585531-12586126,12586292-12586371,12586481-125865... 28 5.4
11_06_0594 + 25349612-25352530 27 7.2
07_03_0571 - 19602755-19603831 27 7.2
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 27 9.5
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 27 9.5
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 33.9 bits (74), Expect = 0.083
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 291 AEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETT 470
A Y LRV+ N + + +S + R + LE ++A A ++LD + K +
Sbjct: 377 ARDYALRVFQDNENLKLELDSRRRELNSRAKQLEKITAENASDRKKLDDQKQKAKDDNSE 436
Query: 471 LSLKLERVQLAAEDL 515
L L Q A ED+
Sbjct: 437 LELASIEQQRADEDV 451
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 352 LFVSVELCVFGE*TRRL*GSAGEVRAKQRHASTPQPHLTSPCL*GYSRHVDXAXSCYCFI 173
+FVS + V G+ L G GE+R R A Q ++ S + +S H+ + + +
Sbjct: 238 VFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQANIPSSVISSHSMHLGVLATAWHAV 297
Query: 172 --GTVFLLFHR 146
GT+F ++++
Sbjct: 298 NTGTMFTVYYK 308
>05_05_0207 + 23272777-23272977,23273831-23275330
Length = 566
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 318 SPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQ 497
S H ++ + + S+EE +++ A +++DA +LD+ LERV+
Sbjct: 307 SNGEHEASTASDVTLSVEEHSVLVQKAEEADAACRKKIDAAMQELDQANRGKLELLERVE 366
Query: 498 LAAEDLE 518
A +E
Sbjct: 367 EAMAAVE 373
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 352 LFVSVELCVFGE*TRRL*GSAGEVRAKQRHASTPQPHLTSPCL*GYSRHVDXAXSCYCFI 173
+FVS + V G+ L G GE+R R A Q ++ S + +S H+ + + +
Sbjct: 220 VFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAV 279
Query: 172 --GTVFLLFHR 146
GT+F ++++
Sbjct: 280 NTGTMFTVYYK 290
>07_03_0811 - 21688781-21689830
Length = 349
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 348 NSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL--KLERVQLAAEDLE 518
+S LAS+ RL L ++ ++ RRL+A+ L+ + T LE V + AE+LE
Sbjct: 284 SSGLASLTLRLAPLTQMTLYNVRRLRRLNAVLPGLEVLSVTECFLEDLEGVSIVAEELE 342
>02_05_1196 -
34901320-34901342,34901937-34902041,34902314-34902482,
34902645-34902716,34902788-34902871,34903219-34903317,
34903416-34903515,34903704-34903878,34903985-34904198,
34904727-34904803,34904879-34905048,34905593-34905629,
34905988-34906123,34906658-34906915
Length = 572
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 378 TALQCWLECYLYP*SCAYLVSRHEDCKARP 289
+A+ CWL+C L Y + H +CK+RP
Sbjct: 89 SAVNCWLKCMLLD---PYNQTDHPECKSRP 115
>03_06_0144 -
31969609-31969866,31969961-31970371,31970472-31970542,
31970637-31970723,31970816-31971389
Length = 466
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 255 VLACLCLAR-TSPAEPYNLRVYSPNTHSSTDTN 350
V ACLC +R T+P + ++P TH DT+
Sbjct: 19 VAACLCCSRKTAPRRKRKKKPHNPVTHFDADTS 51
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEH 521
D + + + ERLR + VQAKQ L +++DK+ R ++E + +LE
Sbjct: 158 DMDRFIKAQSERLRQ-SILEKVQAKQFEALASVEDKILRKIRDKEAEVENINKRNSELED 216
Query: 522 RLSHV 536
++ +
Sbjct: 217 QIKQL 221
>02_02_0642 +
12585531-12586126,12586292-12586371,12586481-12586539,
12587190-12587462,12587876-12587914,12588086-12588231,
12589495-12589696
Length = 464
Score = 27.9 bits (59), Expect = 5.4
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +1
Query: 67 HLVARVYRERVPTRSTCSETVAKLNNTGEITKKQCQ*NNSRXGLNLRAWNIPIDRAMLSV 246
HL RV+ E VPT T + + + + E +K C R N P + + +S
Sbjct: 363 HLYVRVFDEPVPTAPTTLQNILRQGHNREPSK--C---------GRRHINRPNEFSPISC 411
Query: 247 AGACW-RAFVWRAPHRPSLTIFVSTHQ-IRTALRIQIA 354
G W +W R L +STH ++ LR + A
Sbjct: 412 GGNSWFLHLIWHPVVRQELRHDISTHDLVKVILRARDA 449
>11_06_0594 + 25349612-25352530
Length = 972
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 444 DKLDRVETTLSLKLERVQLAAEDLEHR 524
D LDR +LS+++ER++LA +D R
Sbjct: 777 DMLDRSLHSLSIRMERLKLAKDDARKR 803
>07_03_0571 - 19602755-19603831
Length = 358
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 529 ESLCSKSSAASCTLSNFKDRVVSTRSNLS*IASRRR 422
ESL S+ +A +S+ D + R NLS + +R+R
Sbjct: 304 ESLASELAARMSAMSSATDNAIELRKNLSMVYNRQR 339
>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 327 THSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQ--DKLDRVETTLSLKLERVQL 500
T+S+ + +S+ + + R+ S A+ RRL ++ DKLD +T+ +K + V
Sbjct: 930 TYSNVEPDSVQKLVSDLRRLANARSF--ARGMRRLIGVKLNDKLDDDQTSTDIKSQPVNK 987
Query: 501 AAEDLEHRLS 530
D RLS
Sbjct: 988 GNSDAADRLS 997
>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 67 HLVARVYRERVPTRSTCSETVAKLNNTGEITK 162
HL ARV+ ER P+ T +++ K + E +K
Sbjct: 1712 HLYARVFDERAPSAPTLLQSILKQDRCKEPSK 1743
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,625
Number of Sequences: 37544
Number of extensions: 280313
Number of successful extensions: 724
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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