Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0145
(537 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12369-1|CAA30930.1| 227|Homo sapiens tropomyosin (227 AA) prot... 31 3.4
DQ424903-1|ABD83668.1| 245|Homo sapiens tropomyosin 1 alpha var... 31 3.4
BC053545-1|AAH53545.1| 245|Homo sapiens tropomyosin 1 (alpha) p... 31 3.4
BC050473-1|AAH50473.1| 287|Homo sapiens TPM1 protein protein. 31 3.4
AL590431-6|CAH71265.1| 232|Homo sapiens tropomyosin 3 protein. 31 3.4
X04588-1|CAB37185.1| 248|Homo sapiens protein ( Human 2.5 kb mR... 30 4.5
X03541-1|CAA27243.1| 641|Homo sapiens protein ( Human mRNA of t... 30 4.5
BC072428-1|AAH72428.1| 248|Homo sapiens tropomyosin 3 protein. 30 4.5
BC069268-1|AAH69268.1| 990|Homo sapiens golgi autoantigen, golg... 30 4.5
BC015403-1|AAH15403.1| 248|Homo sapiens tropomyosin 3 protein. 30 4.5
BC000771-1|AAH00771.1| 248|Homo sapiens tropomyosin 3 protein. 30 4.5
AY004867-1|AAF87083.1| 247|Homo sapiens tropomyosin isoform pro... 30 4.5
AL590708-22|CAI13841.1| 990|Homo sapiens golgi autoantigen, gol... 30 4.5
AL590708-21|CAI13842.1| 952|Homo sapiens golgi autoantigen, gol... 30 4.5
AL590431-10|CAH71268.1| 247|Homo sapiens tropomyosin 3 protein. 30 4.5
AL590431-9|CAH71267.1| 248|Homo sapiens tropomyosin 3 protein. 30 4.5
AL590431-8|CAH71264.1| 248|Homo sapiens tropomyosin 3 protein. 30 4.5
AL590431-7|CAH71266.1| 248|Homo sapiens tropomyosin 3 protein. 30 4.5
AK075055-1|BAC11372.1| 360|Homo sapiens protein ( Homo sapiens ... 30 4.5
AF474157-1|AAL84570.1| 247|Homo sapiens TPMsk3 protein. 30 4.5
AF248953-1|AAF65550.1| 990|Homo sapiens golgi matrix protein GM... 30 4.5
AF474156-1|AAL84569.1| 203|Homo sapiens TPMsk1 protein. 30 6.0
AB209041-1|BAD92278.1| 303|Homo sapiens TPM1 protein variant pr... 29 7.9
>X12369-1|CAA30930.1| 227|Homo sapiens tropomyosin (227 AA)
protein.
Length = 227
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVE---TTLSLKLERVQLAAEDLE 518
E +LR ET A A RR+ ++++LDR + T+ KLE + AA++ E
Sbjct: 17 ERKLR--ETAEADVASLNRRIQLVEEELDRAQERLATVLQKLEEAEKAADESE 67
>DQ424903-1|ABD83668.1| 245|Homo sapiens tropomyosin 1 alpha
variant 6 protein.
Length = 245
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
E +LR ET A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 38 ERKLR--ETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>BC053545-1|AAH53545.1| 245|Homo sapiens tropomyosin 1 (alpha)
protein.
Length = 245
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
E +LR ET A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 38 ERKLR--ETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>BC050473-1|AAH50473.1| 287|Homo sapiens TPM1 protein protein.
Length = 287
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
E +LR ET A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 80 ERKLR--ETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 130
>AL590431-6|CAH71265.1| 232|Homo sapiens tropomyosin 3 protein.
Length = 232
Score = 30.7 bits (66), Expect = 3.4
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLEHRLSHV 536
+E R E A A RR+ ++++LDR + L+ KLE + AA++ + L +
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADEKKMELQEI 94
>X04588-1|CAB37185.1| 248|Homo sapiens protein ( Human 2.5 kb mRNA
for cytoskeletal tropomyosin TM30(nm). ).
Length = 248
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>X03541-1|CAA27243.1| 641|Homo sapiens protein ( Human mRNA of trk
oncogene. ).
Length = 641
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>BC072428-1|AAH72428.1| 248|Homo sapiens tropomyosin 3 protein.
Length = 248
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>BC069268-1|AAH69268.1| 990|Homo sapiens golgi autoantigen, golgin
subfamily a, 2 protein.
Length = 990
Score = 30.3 bits (65), Expect = 4.5
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 282 TSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRV 461
T + L +Y NT S+ D + +EE+LRVL T +A L+ +Q KL+
Sbjct: 278 TKERDALRLELYK-NTQSNEDLKQEKSELEEKLRVLVT---EKAGMQLNLEELQKKLEMT 333
Query: 462 ETTL 473
E L
Sbjct: 334 ELLL 337
>BC015403-1|AAH15403.1| 248|Homo sapiens tropomyosin 3 protein.
Length = 248
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>BC000771-1|AAH00771.1| 248|Homo sapiens tropomyosin 3 protein.
Length = 248
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>AY004867-1|AAF87083.1| 247|Homo sapiens tropomyosin isoform
protein.
Length = 247
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>AL590708-22|CAI13841.1| 990|Homo sapiens golgi autoantigen, golgin
subfamily a, 2 protein.
Length = 990
Score = 30.3 bits (65), Expect = 4.5
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 282 TSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRV 461
T + L +Y NT S+ D + +EE+LRVL T +A L+ +Q KL+
Sbjct: 278 TKERDALRLELYK-NTQSNEDLKQEKSELEEKLRVLVT---EKAGMQLNLEELQKKLEMT 333
Query: 462 ETTL 473
E L
Sbjct: 334 ELLL 337
>AL590708-21|CAI13842.1| 952|Homo sapiens golgi autoantigen, golgin
subfamily a, 2 protein.
Length = 952
Score = 30.3 bits (65), Expect = 4.5
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 282 TSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRV 461
T + L +Y NT S+ D + +EE+LRVL T +A L+ +Q KL+
Sbjct: 240 TKERDALRLELYK-NTQSNEDLKQEKSELEEKLRVLVT---EKAGMQLNLEELQKKLEMT 295
Query: 462 ETTL 473
E L
Sbjct: 296 ELLL 299
>AL590431-10|CAH71268.1| 247|Homo sapiens tropomyosin 3 protein.
Length = 247
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>AL590431-9|CAH71267.1| 248|Homo sapiens tropomyosin 3 protein.
Length = 248
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>AL590431-8|CAH71264.1| 248|Homo sapiens tropomyosin 3 protein.
Length = 248
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>AL590431-7|CAH71266.1| 248|Homo sapiens tropomyosin 3 protein.
Length = 248
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>AK075055-1|BAC11372.1| 360|Homo sapiens protein ( Homo sapiens
cDNA FLJ90574 fis, clone OVARC1001833, moderately
similar to CIS-GOLGI MATRIX PROTEIN GM130. ).
Length = 360
Score = 30.3 bits (65), Expect = 4.5
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 282 TSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRV 461
T + L +Y NT S+ D + +EE+LRVL T +A L+ +Q KL+
Sbjct: 191 TKERDALRLELYK-NTQSNEDLKQEKSELEEKLRVLVT---EKAGMQLNLEELQKKLEMT 246
Query: 462 ETTL 473
E L
Sbjct: 247 ELLL 250
>AF474157-1|AAL84570.1| 247|Homo sapiens TPMsk3 protein.
Length = 247
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 366 IEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
+E R E A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 88
>AF248953-1|AAF65550.1| 990|Homo sapiens golgi matrix protein GM130
protein.
Length = 990
Score = 30.3 bits (65), Expect = 4.5
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 282 TSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRV 461
T + L +Y NT S+ D + +EE+LRVL T +A L+ +Q KL+
Sbjct: 278 TKERDALRLELYK-NTQSNEDLKQEKSELEEKLRVLVT---EKAGMQLNLEELQKKLEMT 333
Query: 462 ETTL 473
E L
Sbjct: 334 ELLL 337
>AF474156-1|AAL84569.1| 203|Homo sapiens TPMsk1 protein.
Length = 203
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSL---KLERVQLAAEDLE 518
E +LR A A RR+ ++++LDR + L+ KLE + AA++ E
Sbjct: 3 ERKLRETTDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESE 55
>AB209041-1|BAD92278.1| 303|Homo sapiens TPM1 protein variant
protein.
Length = 303
Score = 29.5 bits (63), Expect = 7.9
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 369 EERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLA 503
E +LR ET A A RR+ ++++LDR + L+ L++++ A
Sbjct: 96 ERKLR--ETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEA 138
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,023,092
Number of Sequences: 237096
Number of extensions: 1452033
Number of successful extensions: 3015
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3015
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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