Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0145
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 33 0.099
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 33 0.099
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 33 0.099
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 33 0.099
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 33 0.099
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 33 0.099
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 30 0.92
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 30 0.92
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 30 0.92
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 2.1
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 2.1
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 2.1
Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 28 3.7
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 28 4.9
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 28 4.9
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 28 4.9
U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical p... 27 6.5
U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical p... 27 6.5
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 27 6.5
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ... 27 6.5
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 6.5
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 27 6.5
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLE 518
D ++ + +EE+ + ++ A A RR+ ++++L+R E L + E+++ A +++
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNVD 121
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLE 518
D ++ + +EE+ + ++ A A RR+ ++++L+R E L + E+++ A +++
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNVD 121
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLE 518
D ++ + +EE+ + ++ A A RR+ ++++L+R E L + E+++ A +++
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNVD 121
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLE 518
D ++ + +EE+ + ++ A A RR+ ++++L+R E L + E+++ A +++
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNVD 121
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLE 518
D ++ + +EE+ + ++ A A RR+ ++++L+R E L + E+++ A +++
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNVD 121
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLE 518
D ++ + +EE+ + ++ A A RR+ ++++L+R E L + E+++ A +++
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATEKLEEATHNVD 121
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 357 LASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRLSHV 536
+ ++ RL+ ET + + ++L Q ++DR+E L L+ ERV+ E++E + +
Sbjct: 197 IRTVSSRLKEAETRAEFAERSVQKL---QKEVDRLEDELLLEKERVRNLTEEIEQTVQEI 253
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVE---TTLSLKLERVQLAAED 512
+ + + +EE + E A A RR+ +++ L+R E T + KLE+ AA++
Sbjct: 35 EADEVKRQLEEERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADE 94
Query: 513 LE 518
+
Sbjct: 95 AD 96
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 357 LASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRLSHV 536
+ ++ RL+ ET + + ++L Q ++DR+E L L+ ERV+ E++E + +
Sbjct: 197 IRTVSSRLKEAETRAEFAERSVQKL---QKEVDRLEDELLLEKERVRNLTEEIEQTVQEI 253
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVE---TTLSLKLERVQLAAED 512
+ + + +EE + E A A RR+ +++ L+R E T + KLE+ AA++
Sbjct: 35 EADEVKRQLEEERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADE 94
Query: 513 LE 518
+
Sbjct: 95 AD 96
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 357 LASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRLSHV 536
+ ++ RL+ ET + + ++L Q ++DR+E L L+ ERV+ E++E + +
Sbjct: 197 IRTVSSRLKEAETRAEFAERSVQKL---QKEVDRLEDELLLEKERVRNLTEEIEQTVQEI 253
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVE---TTLSLKLERVQLAAED 512
+ + + +EE + E A A RR+ +++ L+R E T + KLE+ AA++
Sbjct: 35 EADEVKRQLEEERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADE 94
Query: 513 LE 518
+
Sbjct: 95 AD 96
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 330 HSST---DTNSILASIEE-RLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQ 497
H ST D + A IE R + L+ V+AV+A + D D+L ++E +SL +++
Sbjct: 117 HRSTFERDITGLSAEIEVFRKKWLDAVNAVKAHREDH-DVDLDRLAKIEAEISLFKRKIR 175
Query: 498 LAAEDL 515
+ ED+
Sbjct: 176 IVEEDV 181
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 330 HSST---DTNSILASIEE-RLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQ 497
H ST D + A IE R + L+ V+AV+A + D D+L ++E +SL +++
Sbjct: 743 HRSTFERDITGLSAEIEVFRKKWLDAVNAVKAHREDH-DVDLDRLAKIEAEISLFKRKIR 801
Query: 498 LAAEDL 515
+ ED+
Sbjct: 802 IVEEDV 807
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 330 HSST---DTNSILASIEE-RLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQ 497
H ST D + A IE R + L+ V+AV+A + D D+L ++E +SL +++
Sbjct: 743 HRSTFERDITGLSAEIEVFRKKWLDAVNAVKAHREDH-DVDLDRLAKIEAEISLFKRKIR 801
Query: 498 LAAEDL 515
+ ED+
Sbjct: 802 IVEEDV 807
>Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical
protein F48F7.4 protein.
Length = 925
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 182 LFYWHCFFVISPVLFNFATVSEHVLRVGTRSRYTRATRCGCRSMPQR 42
LF + F ++S +LF F+T + H+L + S + C C P+R
Sbjct: 10 LFQFSNFLLLSSILFLFST-NSHLLLTISLSSSSSTPMCFCLQRPRR 55
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEH 521
+T L+ +E +S A +++ A ++KL +ET +S + V A +DLEH
Sbjct: 40 ETKKALSDANISKEDIEEMSKKLALLKKQVIAGREKLGAIETRISNITQAVDFAQKDLEH 99
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 197 SPFLLLFYWHCFFVISPVLFNFATVSEHVLRVGTRSRYTRATRCG 63
SPF+ FY+ F L +AT ++ G R TRA+ G
Sbjct: 406 SPFMKFFYYSVSFATFLGLLTWATFEDYRYEKGERGGMTRASDRG 450
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 197 SPFLLLFYWHCFFVISPVLFNFATVSEHVLRVGTRSRYTRATRCG 63
SPF+ FY+ F L +AT ++ G R TRA+ G
Sbjct: 386 SPFMKFFYYSVSFATFLGLLTWATFEDYRYEKGERGGMTRASDRG 430
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 197 SPFLLLFYWHCFFVISPVLFNFATVSEHVLRVGTRSRYTRATRCG 63
SPF+ FY+ F L +AT ++ G R TRA+ G
Sbjct: 386 SPFMKFFYYSVSFATFLGLLTWATFEDYRYEKGERGGMTRASDRG 430
>U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical
protein F36D4.5b protein.
Length = 315
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 532 CESLCSKSSAASCTLSNFKDRVVSTRSNLS 443
C S S SSA+SC ++ D +V T S S
Sbjct: 218 CMSPSSSSSASSCDTLDYDDLIVQTPSTFS 247
>U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical
protein F36D4.5a protein.
Length = 334
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 532 CESLCSKSSAASCTLSNFKDRVVSTRSNLS 443
C S S SSA+SC ++ D +V T S S
Sbjct: 237 CMSPSSSSSASSCDTLDYDDLIVQTPSTFS 266
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVE---TTLSLKLERVQLAAED 512
+ + + +EE + E A A RR+ +++ L+R E T + KLE+ AA++
Sbjct: 35 EADEVKRQLEEERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADE 94
Query: 513 LE 518
+
Sbjct: 95 AD 96
>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
protein Y79H2A.3b protein.
Length = 1271
Score = 27.5 bits (58), Expect = 6.5
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = +3
Query: 273 LARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKL 452
L P E Y ++VY P +ILA I+ + KQ RRLD ++KL
Sbjct: 1024 LKEIHPPEDYCIKVYDPIGEEERKQFAILAKIQ-----------AEEKQ-RRLDEAKEKL 1071
Query: 453 DRVETTLSLKLERVQLAAED 512
+ L LK E +Q E+
Sbjct: 1072 AIDKEKLRLKKEALQRELEE 1091
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.5 bits (58), Expect = 6.5
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = +3
Query: 273 LARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKL 452
L P E Y ++VY P +ILA I+ + KQ RRLD ++KL
Sbjct: 1024 LKEIHPPEDYCIKVYDPIGEEERKQFAILAKIQ-----------AEEKQ-RRLDEAKEKL 1071
Query: 453 DRVETTLSLKLERVQLAAED 512
+ L LK E +Q E+
Sbjct: 1072 AIDKEKLRLKKEALQRELEE 1091
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVE---TTLSLKLERVQLAAED 512
+ + + +EE + E A A RR+ +++ L+R E T + KLE+ AA++
Sbjct: 35 EADEVKRQLEEERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADE 94
Query: 513 LE 518
+
Sbjct: 95 AD 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,767
Number of Sequences: 27780
Number of extensions: 237404
Number of successful extensions: 713
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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