Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0145
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 109 STCSETVAKLNNTGEITKKQCQ*NNSRXG 195
           STCS  VAK  N   +T      NNS  G
Sbjct: 517 STCSLAVAKQQNQVPLTSSSNVNNNSGNG 545


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 28  HSKQSRCGMLRQPHLVARVYRERVPTRSTCSETVAKLN 141
           HSK SR  + R   +  ++ + R    S   ETV  LN
Sbjct: 490 HSKSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLN 527


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 375 ALQCWLECYLYP*SCAYLVSRHEDCKARPVRCAPNKG 265
           A+ CW     Y      +V+RH++    P     N+G
Sbjct: 337 AVGCWNSLLPYSPENQAVVARHDEAMIFPADVKINRG 373


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 161 FVISPVLFNFATVSEHVLRVGTRSRYTRATRCGCRSMPQRLCFECRHASSVR 6
           + ++  L+ F+T    +L     ++Y  A +  CR  P          SSVR
Sbjct: 298 YPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSPSNPSITRTGLSSVR 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,173
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)