Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0143
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17910.1 68418.m02100 expressed protein 31 0.80
At3g55990.1 68416.m06221 expressed protein contains Pfam profile... 30 1.1
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put... 29 3.2
At1g11400.2 68414.m01310 expressed protein 29 3.2
At1g11400.1 68414.m01309 expressed protein 29 3.2
At5g27330.1 68418.m03263 expressed protein 28 4.2
At3g06670.1 68416.m00786 expressed protein 28 5.6
At1g71150.1 68414.m08210 expressed protein ; expression support... 28 5.6
At5g35810.1 68418.m04303 hypothetical protein 27 7.4
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 27 7.4
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 27 7.4
At3g44900.1 68416.m04837 cation/hydrogen exchanger, putative (CH... 27 7.4
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 27 9.8
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 98 RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVA 244
RQ+ + E K+ ++ +S T D +K E N+D++ +AK D V+
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVS 572
>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 487
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 56 SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKY 232
+ KP D+ TPI +I T+ ++ I+N + + + + +Q + K++ + V+K
Sbjct: 56 TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115
Query: 233 DEV 241
+EV
Sbjct: 116 EEV 118
>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 898
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -2
Query: 431 VLASALPICIRQSRISKTSFILL--VSAA*RTQASFLACFFASRSEEIAIAVTCFERSLA 258
+LASA + I + + + +LL + +++S +A + EE+A+ FER L
Sbjct: 539 ILASAASVGIIIAVLLLVNILLLRKKKPSKASRSSMVANKRSYTYEEVAVITNNFERPLG 598
Query: 257 NQGFGQLHH 231
GFG ++H
Sbjct: 599 EGGFGVVYH 607
>At1g11400.2 68414.m01310 expressed protein
Length = 204
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 116 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTL 253
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196
>At1g11400.1 68414.m01309 expressed protein
Length = 204
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 116 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTL 253
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 80 DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 211
D++T IR + IR LE + S++ RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187
>At3g06670.1 68416.m00786 expressed protein
Length = 865
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +2
Query: 38 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 217
SA+N + EKPAS+ K+ P + + + R L Y D + +K
Sbjct: 672 SASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYEDDEDDEDYKPPPRKQ 731
Query: 218 AVAKYDEVAQTL 253
A DE + L
Sbjct: 732 PEASEDEEGELL 743
>At1g71150.1 68414.m08210 expressed protein ; expression supported
by MPSS
Length = 351
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 44 ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 148
++ KS K +SSE R++ ++IEH + L+ R
Sbjct: 303 SDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337
>At5g35810.1 68418.m04303 hypothetical protein
Length = 347
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 470 VNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLACFF 315
+ L A FV + VLA + + + + K S ILLV A T SF+ F
Sbjct: 270 LGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 474 GXFKNFG*FIPWVTPKHELNGXRANLVFTFQ*PE 575
G K FG + W KH+ +G + ++VFT P+
Sbjct: 249 GGKKGFGDVV-WAVAKHQYDGKKPHIVFTHTSPD 281
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +2
Query: 110 TIIEHKIRNLEKRKSKLT-SYRDL-QKAGKELNSDQ 211
++++H+IRN + K ++T Y++L KA E NSD+
Sbjct: 115 SLLDHEIRNHKSSKEQITQDYKNLTSKAQLEENSDE 150
>At3g44900.1 68416.m04837 cation/hydrogen exchanger, putative (CHX4)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 817
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -2
Query: 548 IGPSAI*FMLRGHPGYKSSKIFKXSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFI 369
IGP + + P S+ + K SV + F+PF + A + I QS I S +
Sbjct: 330 IGPFILGLAVPHGPPLGSAILQKFESV-VFGTFLPFFVATSAEEIDTSILQSWIDLKSIV 388
Query: 368 LLVSAA 351
+LVS +
Sbjct: 389 ILVSVS 394
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 89 TPIRQIMTIIEHKIRNLEKRKSKLTS 166
T ++Q+ T IEH + L++RKS+L S
Sbjct: 412 TELKQLKTKIEHCEKELKERKSQLMS 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,828
Number of Sequences: 28952
Number of extensions: 211236
Number of successful extensions: 536
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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