Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0140
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.3  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   5.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 185 GASVVPDVY-SMYKGSL---ASTDSHGTGSASKPSSQDMSLP 72
           G  ++ D Y SM  G+    AS   H TGSA  P++    LP
Sbjct: 232 GQHLLQDTYKSMLPGAQTVGASFGLHATGSAPSPTAGAGGLP 273


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 143 NPCTYYTHLVQLTPQKE 193
           NP  Y+  L+ + P+KE
Sbjct: 323 NPADYFIQLLAIVPEKE 339


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 143 NPCTYYTHLVQLTPQKE 193
           NP  Y+  L+ + P+KE
Sbjct: 323 NPADYFIQLLAIVPEKE 339


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 276 ASDLGWVVGHSYICYGPLLAG 338
           A D  W V  + I Y PLLAG
Sbjct: 414 AEDSKWRVRSAIIEYMPLLAG 434


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,255
Number of Sequences: 336
Number of extensions: 4739
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)