Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0140
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 71 1e-13
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 31 0.22
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 30 0.38
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 28 1.2
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 2.0
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 27 2.0
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 27 2.7
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 2.7
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.7
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 26 4.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 6.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.2
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.2
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 71.3 bits (167), Expect = 1e-13
Identities = 28/65 (43%), Positives = 45/65 (69%)
Frame = +3
Query: 276 ASDLGWVVGHSYICYGPLLAGMTSVLYEGKPDRTPDPGQYFRIIEQHRVNALFTIPTAFR 455
A D+GW+ GH+YI YGPL+ G ++++E P PD +Y+ ++E+HR+ + PTA R
Sbjct: 313 AGDVGWITGHTYIVYGPLMLGAATLVFESTP-AYPDYSRYWSVVERHRLTQWYIAPTAIR 371
Query: 456 VLKRA 470
+L+RA
Sbjct: 372 LLQRA 376
Score = 42.7 bits (96), Expect = 5e-05
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 19 RSCIIYQRRRVLECPLEIGRDISWDEGLEADPVPCESVEAN--EPLYILYTSGTTDAPKG 192
+ +++QR + GRD+ W + + P C N PL++LYTSG+T PKG
Sbjct: 223 KKVLVFQRSAEPTASMVEGRDVWWHDIIPKFPRYCPPAVVNPEHPLFLLYTSGSTGKPKG 282
Query: 193 V 195
V
Sbjct: 283 V 283
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 30.7 bits (66), Expect = 0.22
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 79 DISWDEGLEADPVPCESVEANEPLYILYTSGTTDAPKGV 195
+I D+ + P P ES+++ Y+LYTSG+T PKGV
Sbjct: 342 EIKVDDEIPPFPFP-ESLDS--VAYVLYTSGSTGNPKGV 377
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 151 YILYTSGTTDAPKG 192
Y+LYTSG+T PKG
Sbjct: 2874 YVLYTSGSTGKPKG 2887
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 29.9 bits (64), Expect = 0.38
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -2
Query: 503 AVSPRVF-SVSIGSFQHPECRRNRE*SVYTMLLYYPEILSRIWRTIGF---SFIQNGSHS 336
AV+P V S + +HP ++ S+ T LL YP+ + R GF S I +G HS
Sbjct: 498 AVNPNVSPSTVLEHAKHPSLAKHSGVSLRTGLLIYPKYANGSKRKDGFGATSIISSGEHS 557
Query: 335 S 333
S
Sbjct: 558 S 558
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 560 GNGAERVFGVPVLQFIGGQNGNQGSP 637
G+G FG+P LQ++ G + N+ P
Sbjct: 212 GSGKTVAFGIPALQYLNGLSDNKSVP 237
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -2
Query: 224 SVAAWPQGR*TPFGASVVPDVYSMYKGSLASTDSHGTGSA--SKPSSQDMSLPISRGHSS 51
SV + P GR + A V P +Y + AST S GS+ S P+S + + +RG +
Sbjct: 255 SVPSAPYGRASSTIAEVSP-MYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPT 313
Query: 50 T 48
T
Sbjct: 314 T 314
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 556 VSLVTMLSSNEDRL**FWQYLLAYLALVSARFST--LNAVGIVNRAFTRCCS 407
+ +V+ + +ED F Q ++L +V+ FS N GIV R+F C S
Sbjct: 352 IQVVSDVDDDEDDENAFSQNYYSHLQMVAKHFSKNYANQSGIVQRSFAECIS 403
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 112 PVPCESVEANEPLYILYTSGTTDAPKGV 195
PV + E I+YTSG+T PKGV
Sbjct: 230 PVEPDPPSPEEICCIMYTSGSTGLPKGV 257
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 112 PVPCESVEANEPLYILYTSGTTDAPKGV 195
P P +A++ +YTSG+T PKGV
Sbjct: 236 PQPPHPPKADDICCYMYTSGSTGKPKGV 263
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 112 PVPCESVEANEPLYILYTSGTTDAPKGVQRPCGHAATLCWSMKKV 246
P P + ++ + +L+TSGTT PK V P H LC S+ +
Sbjct: 152 PQPLGLPQPDDVMLVLHTSGTTGRPKVV--PLTH-KNLCRSIHNI 193
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 371 SYARSWTIFQDNRATSCKRSIHDSDG 448
SY R W+I D ++ S+ DSDG
Sbjct: 346 SYIRLWSIKADKKSLPKSTSVEDSDG 371
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 557 KGNGAERVFGVPVLQFIGGQNGNQGSPDHLQPLPW 661
+GN + R +PV+ + + + +P H+Q PW
Sbjct: 19 EGNASMRKRTIPVVPSVPERKWDPKAPKHIQEQPW 53
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 226 CWSMKKVYGLNXECGGRRQTWAGWSVIR 309
C++M + ++ G R TW GW+VIR
Sbjct: 697 CYTMSLLLDVS-STGKIRGTWIGWAVIR 723
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -2
Query: 194 TPFGASVVPDVYSMYKGSLASTDSHGTGSASKPSSQDMSLPISRGHSS 51
TP S V + +T T SAS PSS +P S SS
Sbjct: 638 TPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFTSS 685
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 88 WDEGLEADPVPCESVEANEPLYILYTSGTTDAPKGV 195
W+ E + +++P +++TS TDA KG+
Sbjct: 26 WESMSEGLKEALNLISSDDPTVLVFTSPKTDAVKGI 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,313
Number of Sequences: 5004
Number of extensions: 75830
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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