Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0139
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    55   1e-08
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   5.1  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   6.7  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   6.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.7  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   6.7  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   ENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQVDHN-DYDMVE 178
           ++L    + R+VKP ILS F DIAL+IG+ F  Y + VM +L QAS+ Q     ++ M++
Sbjct: 689 QDLQSSVLDRNVKPAILSCFSDIALAIGAAFQTYLEAVMVLLQQASSVQAPPGANFSMID 748

Query: 179 YLGELR 196
           Y+  LR
Sbjct: 749 YVDALR 754


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 636 LVFXAGVFKMLVGPXK--FQNSAWQRGKGSALTRTHSLFGSPXXGKRSLV 493
           +V  + V KM+        +NS W   +G    R + L+G P  GK S +
Sbjct: 210 VVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 401 GRTCLPHARHQSRFTDMLQGWRRRLP 478
           GR CL    H        +GWR+ +P
Sbjct: 320 GRDCLDEINHYKGLAQRKRGWRKLVP 345


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 26  HRSVKPEILSVFGDIALSIGSDFG 97
           HR +KPE + +  D  L I SDFG
Sbjct: 292 HRDIKPENILITNDFHLKI-SDFG 314


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 358  GHIGXHGATLLNAFGAHVLAPC 423
            G IG H  TLLN F +H    C
Sbjct: 1107 GDIGEHSKTLLNYFESHGAVHC 1128


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 184 G*TPRKVLEAYTGIIQGLKGVGSQYDRTSLSSSRTCRAIV 303
           G TP K++   TG+++       Q DR SLS + TC  +V
Sbjct: 851 GDTPSKLVILETGMVKA----SYQMDRESLSENITCLCVV 886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,609
Number of Sequences: 5004
Number of extensions: 58157
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)