Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0139
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0648 + 16563147-16565557,16565655-16565850 64 2e-10
03_02_0662 - 10250235-10250433,10250692-10253105 59 3e-09
12_02_0820 + 23437811-23440230,23440336-23440534 57 2e-08
08_02_0292 - 15420378-15421229 33 0.33
06_03_1007 + 26869731-26870429,26871262-26871387 33 0.33
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911... 31 1.00
03_02_0383 + 7966929-7968951,7969085-7969104 31 1.3
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 29 5.3
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 28 9.3
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 28 9.3
03_01_0074 + 610948-611184,611745-611867,611983-612082,612167-61... 28 9.3
01_07_0251 + 42289617-42291241,42291424-42292156 28 9.3
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 63.7 bits (148), Expect = 2e-10
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 ENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASN--AQVDHNDYDMV 175
++L + ++RSVKP I S FGDIAL+IG +F KY M ML A+ A +DH D DMV
Sbjct: 696 KDLSNSMLNRSVKPPIFSCFGDIALAIGDNFEKYLPYAMPMLQGAAELLAVLDHTDEDMV 755
Query: 176 EYLGELR 196
+Y +LR
Sbjct: 756 DYGNQLR 762
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 196 RKVLEAYTGIIQGLKGVGSQ 255
R + EAY+GI+QG+KG +Q
Sbjct: 763 RGIFEAYSGILQGIKGAKAQ 782
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +2
Query: 2 ENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNA--QVDHNDYDMV 175
++L P +HRSVKP ILS GDIAL++G F KY M ML A+ ++D D D +
Sbjct: 696 KDLSSPELHRSVKPPILSCIGDIALTMGEHFEKYVPYTMPMLQGAAELCFRMDAPDDDSI 755
Query: 176 EYLGEL-RERF--WKHTLESFKALK 241
EY EL R F + L+ FK K
Sbjct: 756 EYQNELSRSIFEAYSGILQGFKNSK 780
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 ENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQAS--NAQVDHNDYDMV 175
++L +HRSVKP I S FGDIAL+IG +F KY M ML A+ +A D +M+
Sbjct: 698 KDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLIYAMPMLQSAADLSAHAAAADDEML 757
Query: 176 EYLGELR 196
+Y +LR
Sbjct: 758 DYTNQLR 764
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +1
Query: 202 VLEAYTGIIQGLKGVGSQYDRTSLSSSRTCRAIVNFMIQVANEEDRTDAQDGGHIGXHGA 381
+LEAY+GI+QG K +T L + I+NF+ + N +D D IG G
Sbjct: 767 ILEAYSGILQGFK----SSPKTQL-LMQYAPNILNFLDALYNGKDMDDTVMKTAIGVLG- 820
Query: 382 TLLNAFGAH 408
L + G H
Sbjct: 821 DLADTLGVH 829
>08_02_0292 - 15420378-15421229
Length = 283
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 445 RHAARLAPAASPRGRRNQRTLPXXGRTKKRMRSRQSR 555
R R + AA P GRR + T GR+++R R+R+ R
Sbjct: 18 RERRRGSAAAEPSGRRRELTTSGGGRSRRRSRTRRRR 54
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 395 RSGRTCLPHARHQSRFTDMLQGWRRRLPRVGGATKERFPIXGEPKREC 538
R GR P A + R +L+GW +R+ GA + R G R C
Sbjct: 92 RRGRRRRPRAAARPRAEVVLEGWGKRMGLAAGAARRRAAAAGRALRAC 139
>01_06_1171 -
35089719-35090336,35090596-35090715,35090851-35091108,
35091934-35092563
Length = 541
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 662 GIFTPASNVWFSXLAFLKCLLXRXNSKIQLGKEGR 558
G+ TP SNVW + L+ + R N ++ KE R
Sbjct: 349 GVLTPKSNVWCFGVVLLELITGRKNLDVRSSKEER 383
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = -3
Query: 533 LFLVRPKXGSVLWLRRPRGEAAGANLAACR*TGFGVEHGAST 408
L LV G +WLRR R AGA A G GV GA T
Sbjct: 51 LVLVALGLGLFVWLRRGRKRGAGAGGGAAARMGVGVGVGART 92
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 424 STPKPVHRHAARLAPAASP--RGRRNQRTLPXXGRTKKRMRSR 546
S P+ RL+P SP R R++ P GR++ R RSR
Sbjct: 41 SPSPPLPPRKRRLSPTPSPTRRSSRSRSRSPRRGRSRSRSRSR 83
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 591 KFQNSAWQRGKGSALTRTHSLFGSPXXGKRSLVAPP 484
K + + Q G G +TRT SL G+P ++ + PP
Sbjct: 1092 KLKEATKQLGLGPPITRTRSLSGTPQELNQAPMQPP 1127
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 178 IFG*TPRKVLEAYTGIIQGLKGVGSQYDRTSLSSSRTCRAIVNFMIQ 318
+FG T K E + I G KG+G S + R I FMIQ
Sbjct: 60 LFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPFHRIIPGFMIQ 106
>03_01_0074 +
610948-611184,611745-611867,611983-612082,612167-612213,
612292-612450,613033-613132,613209-613300,613390-614532,
614949-615041,615408-615493,615746-615873,615965-616086,
616202-616270,616380-616518,616624-616686,616887-616930,
617339-617425
Length = 943
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 612 KMLVGPXKFQNSAWQRGKGSALTRTHSLFG 523
K VGP K+QN + K SA+ +HSL G
Sbjct: 670 KTTVGPNKYQNLGSRTEKDSAVRFSHSLPG 699
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 388 LNAFGAHVLAPCSTPK---PVHRHAARLAPAAS 477
L+AF H+L C++ + VH H AR PAAS
Sbjct: 10 LDAFYLHLLRACTSLRHAAAVHAHIARAHPAAS 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,076,024
Number of Sequences: 37544
Number of extensions: 429219
Number of successful extensions: 1343
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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