BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0139 (760 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 87 1e-17 SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047 SB_16246| Best HMM Match : Penaeidin (HMM E-Value=3) 32 0.44 SB_16777| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.4) 30 1.8 SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 30 2.3 SB_58567| Best HMM Match : Phage_integrase (HMM E-Value=1) 29 3.1 SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 4.1 SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4 SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 28 7.2 SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 28 7.2 SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5 SB_35082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5 SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0) 28 9.5 >SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) Length = 681 Score = 87.0 bits (206), Expect = 1e-17 Identities = 41/66 (62%), Positives = 48/66 (72%) Frame = +2 Query: 2 ENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQVDHNDYDMVEY 181 EN D ++HRSVKP ILSVFGDIAL+ G F KY DVV+ L QA+ QV DYDM++Y Sbjct: 593 ENCHDETVHRSVKPHILSVFGDIALATGPHFKKYLDVVIATLTQATQVQVVKTDYDMIDY 652 Query: 182 LGELRE 199 L ELRE Sbjct: 653 LNELRE 658 Score = 30.3 bits (65), Expect = 1.8 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +1 Query: 205 LEAYTGIIQGLKG 243 LEAYTGIIQGLKG Sbjct: 661 LEAYTGIIQGLKG 673 >SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1272 Score = 35.5 bits (78), Expect = 0.047 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 433 KPVHRHAARLAPAASPRGRRNQRTLPXXGRT-KKRMRSRQSRTLPSLP 573 +P H+ R ++ PR R QRT P RT + R RSR SR PS P Sbjct: 1048 RPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPP 1095 >SB_16246| Best HMM Match : Penaeidin (HMM E-Value=3) Length = 555 Score = 32.3 bits (70), Expect = 0.44 Identities = 18/31 (58%), Positives = 19/31 (61%) Frame = -2 Query: 579 SAWQRGKGSALTRTHSLFGSPXXGKRSLVAP 487 SAW G+G L RT S FGSP R LVAP Sbjct: 469 SAWLLGQGPRLLRTPSRFGSPLV-PRLLVAP 498 >SB_16777| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.4) Length = 167 Score = 30.3 bits (65), Expect = 1.8 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 579 SAWQRGKGSALTRTHSLFGSPXXGKRSLVAPPTRGSRR 466 S W+RG G+ T + G P +L+ PTRG RR Sbjct: 46 SDWRRGPGNGATDCRKVVGKPVV-PAALMNRPTRGERR 82 >SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) Length = 672 Score = 29.9 bits (64), Expect = 2.3 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +3 Query: 174 LNIWVNSAKGSGSIHWNHSRP*RCRFSVRPDIAIVEPH 287 LNIW++ G +H++ C+ S + + + EPH Sbjct: 457 LNIWLSDGNTLGKLHFDPFENFLCQISGKKQVILYEPH 494 >SB_58567| Best HMM Match : Phage_integrase (HMM E-Value=1) Length = 257 Score = 29.5 bits (63), Expect = 3.1 Identities = 13/52 (25%), Positives = 28/52 (53%) Frame = +1 Query: 202 VLEAYTGIIQGLKGVGSQYDRTSLSSSRTCRAIVNFMIQVANEEDRTDAQDG 357 VLEA++GII + +G+ R+ +++ + + + Q+ + A+DG Sbjct: 188 VLEAFSGIIPNITDIGTHSHRSGGATAAVAAGVADRLFQIHGRWKSSCAKDG 239 >SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) Length = 2269 Score = 29.1 bits (62), Expect = 4.1 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -2 Query: 585 QNSAWQRGKGSALTRTHSLFGSPXXGKRSLVAPPTRGSRRRQPCSMSVNRLWC 427 QN + SA+T + S F S GK ++PP RRR + L C Sbjct: 115 QNLGMAKVVASAVTESLSKFSSKGDGKLENISPPKWDGRRRSYATWKKEFLHC 167 >SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2463 Score = 29.1 bits (62), Expect = 4.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -2 Query: 498 LVAPPTRGSRRRQPC 454 ++ P RGSRRRQPC Sbjct: 1968 IIGPAVRGSRRRQPC 1982 >SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 604 Score = 28.7 bits (61), Expect = 5.4 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -3 Query: 113 RHQNIFQNRYQYSKQCLQIQIIFQASLIGELMDHLNS 3 RH N+ Q Y+ C +I ++ + + G+L+D++NS Sbjct: 109 RHHNVIQ-LYETFHTCHKIFLVMEYAAKGDLLDYINS 144 >SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) Length = 1277 Score = 28.3 bits (60), Expect = 7.2 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +1 Query: 430 PKPVHRHAARLAPAASPRGRRNQRTLPXXGRTKKRMR 540 P P+ ++ +P SP+GRR +LP G + R Sbjct: 505 PAPIPSLSSGSSPGGSPKGRRRLPSLPTDGERRGSQR 541 >SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) Length = 797 Score = 28.3 bits (60), Expect = 7.2 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Frame = +1 Query: 382 TLLNAFGAHVLAPCSTPKPVHRHAARLAPA-ASPRGRRNQRTLPXXGRTKKRMRSRQSRT 558 T L A+ P +T VH PA SPR R + RT P T R+ + Sbjct: 630 TPLPAYSPRTTLPANTTPRVHHSPRTPLPAYTSPRVRHSPRT-PVPAYTSPRVHQSPRTS 688 Query: 559 LPS 567 LP+ Sbjct: 689 LPA 691 >SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 807 Score = 27.9 bits (59), Expect = 9.5 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 432 KAGSPTCCKVGAGGFPAWAAQPKNASXFXANQKENAFAS 548 +AG C + GG PAW KN+S + K+ A+ S Sbjct: 114 RAGPYICAEWDFGGLPAWLL--KNSSITLRSSKDQAYMS 150 >SB_35082| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 193 Score = 27.9 bits (59), Expect = 9.5 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -2 Query: 537 HSLFGSPXXGKRSLVAPPTRGSRRR--QPCSMSVNRLW 430 H L S K SL A T G RR +PCS SV LW Sbjct: 46 HDLRWSRHCCKVSLKANKTLGLLRRTLKPCSQSVKELW 83 >SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0) Length = 739 Score = 27.9 bits (59), Expect = 9.5 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +1 Query: 220 GIIQGLKGVGSQYDRTSLSSSRTCRAIVNFMIQVANEEDRTDAQDGGHIGXHGATLLNAF 399 G++ L G G + + S+R + V +I EE + +GG +G ++L N + Sbjct: 165 GVVGDLFGAGKMFLPQVIKSARVMKKAVGHLIPFMEEERQMRLANGGGVG--DSSLKNKY 222 Query: 400 -GAHVLA 417 G VLA Sbjct: 223 NGTIVLA 229 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,531,781 Number of Sequences: 59808 Number of extensions: 456285 Number of successful extensions: 1121 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1070 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1121 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2070332524 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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