Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0139
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 87 1e-17
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_16246| Best HMM Match : Penaeidin (HMM E-Value=3) 32 0.44
SB_16777| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.4) 30 1.8
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 30 2.3
SB_58567| Best HMM Match : Phage_integrase (HMM E-Value=1) 29 3.1
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 4.1
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 28 7.2
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 28 7.2
SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_35082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0) 28 9.5
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 87.0 bits (206), Expect = 1e-17
Identities = 41/66 (62%), Positives = 48/66 (72%)
Frame = +2
Query: 2 ENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQVDHNDYDMVEY 181
EN D ++HRSVKP ILSVFGDIAL+ G F KY DVV+ L QA+ QV DYDM++Y
Sbjct: 593 ENCHDETVHRSVKPHILSVFGDIALATGPHFKKYLDVVIATLTQATQVQVVKTDYDMIDY 652
Query: 182 LGELRE 199
L ELRE
Sbjct: 653 LNELRE 658
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 205 LEAYTGIIQGLKG 243
LEAYTGIIQGLKG
Sbjct: 661 LEAYTGIIQGLKG 673
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 35.5 bits (78), Expect = 0.047
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 KPVHRHAARLAPAASPRGRRNQRTLPXXGRT-KKRMRSRQSRTLPSLP 573
+P H+ R ++ PR R QRT P RT + R RSR SR PS P
Sbjct: 1048 RPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPP 1095
>SB_16246| Best HMM Match : Penaeidin (HMM E-Value=3)
Length = 555
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = -2
Query: 579 SAWQRGKGSALTRTHSLFGSPXXGKRSLVAP 487
SAW G+G L RT S FGSP R LVAP
Sbjct: 469 SAWLLGQGPRLLRTPSRFGSPLV-PRLLVAP 498
>SB_16777| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.4)
Length = 167
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 579 SAWQRGKGSALTRTHSLFGSPXXGKRSLVAPPTRGSRR 466
S W+RG G+ T + G P +L+ PTRG RR
Sbjct: 46 SDWRRGPGNGATDCRKVVGKPVV-PAALMNRPTRGERR 82
>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
Length = 672
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 174 LNIWVNSAKGSGSIHWNHSRP*RCRFSVRPDIAIVEPH 287
LNIW++ G +H++ C+ S + + + EPH
Sbjct: 457 LNIWLSDGNTLGKLHFDPFENFLCQISGKKQVILYEPH 494
>SB_58567| Best HMM Match : Phage_integrase (HMM E-Value=1)
Length = 257
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 202 VLEAYTGIIQGLKGVGSQYDRTSLSSSRTCRAIVNFMIQVANEEDRTDAQDG 357
VLEA++GII + +G+ R+ +++ + + + Q+ + A+DG
Sbjct: 188 VLEAFSGIIPNITDIGTHSHRSGGATAAVAAGVADRLFQIHGRWKSSCAKDG 239
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 585 QNSAWQRGKGSALTRTHSLFGSPXXGKRSLVAPPTRGSRRRQPCSMSVNRLWC 427
QN + SA+T + S F S GK ++PP RRR + L C
Sbjct: 115 QNLGMAKVVASAVTESLSKFSSKGDGKLENISPPKWDGRRRSYATWKKEFLHC 167
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 498 LVAPPTRGSRRRQPC 454
++ P RGSRRRQPC
Sbjct: 1968 IIGPAVRGSRRRQPC 1982
>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -3
Query: 113 RHQNIFQNRYQYSKQCLQIQIIFQASLIGELMDHLNS 3
RH N+ Q Y+ C +I ++ + + G+L+D++NS
Sbjct: 109 RHHNVIQ-LYETFHTCHKIFLVMEYAAKGDLLDYINS 144
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 430 PKPVHRHAARLAPAASPRGRRNQRTLPXXGRTKKRMR 540
P P+ ++ +P SP+GRR +LP G + R
Sbjct: 505 PAPIPSLSSGSSPGGSPKGRRRLPSLPTDGERRGSQR 541
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 382 TLLNAFGAHVLAPCSTPKPVHRHAARLAPA-ASPRGRRNQRTLPXXGRTKKRMRSRQSRT 558
T L A+ P +T VH PA SPR R + RT P T R+ +
Sbjct: 630 TPLPAYSPRTTLPANTTPRVHHSPRTPLPAYTSPRVRHSPRT-PVPAYTSPRVHQSPRTS 688
Query: 559 LPS 567
LP+
Sbjct: 689 LPA 691
>SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 432 KAGSPTCCKVGAGGFPAWAAQPKNASXFXANQKENAFAS 548
+AG C + GG PAW KN+S + K+ A+ S
Sbjct: 114 RAGPYICAEWDFGGLPAWLL--KNSSITLRSSKDQAYMS 150
>SB_35082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 537 HSLFGSPXXGKRSLVAPPTRGSRRR--QPCSMSVNRLW 430
H L S K SL A T G RR +PCS SV LW
Sbjct: 46 HDLRWSRHCCKVSLKANKTLGLLRRTLKPCSQSVKELW 83
>SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)
Length = 739
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 220 GIIQGLKGVGSQYDRTSLSSSRTCRAIVNFMIQVANEEDRTDAQDGGHIGXHGATLLNAF 399
G++ L G G + + S+R + V +I EE + +GG +G ++L N +
Sbjct: 165 GVVGDLFGAGKMFLPQVIKSARVMKKAVGHLIPFMEEERQMRLANGGGVG--DSSLKNKY 222
Query: 400 -GAHVLA 417
G VLA
Sbjct: 223 NGTIVLA 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,531,781
Number of Sequences: 59808
Number of extensions: 456285
Number of successful extensions: 1121
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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