Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0139
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    51   1e-06
AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical...    33   0.22 
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   4.7  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   4.7  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    28   6.3  
AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +2

Query: 8   LGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQV--DHNDYDMVEY 181
           L  P + R+VK  I+  F DIA++I + F +Y   V+ +L  A NA V  D ND D V+Y
Sbjct: 710 LQSPRLDRNVKVVIIGTFADIAMAIEAHFERYVGSVVPILNNAQNAAVVTDPNDDDQVDY 769

Query: 182 LGELRE 199
           +  LRE
Sbjct: 770 VDRLRE 775


>AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical
           protein F52C6.14 protein.
          Length = 779

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +1

Query: 304 NFMIQVANEEDRTDAQDGGHIGXHGATLLNAFGAHVLAPCSTPKPVHRHAARLAPAASPR 483
           NFM+ + N   R   ++G          +  F    LA  STP  V R  +R  P  + +
Sbjct: 612 NFMMALVNTNLRKQLREGAEELPGNVVKVKNFLKEYLAESSTPTLVERADSRDQPLTARQ 671

Query: 484 GRRNQRTLPXXGRTKKR-MRSRQSRTLP 564
               + TL    +TK+R + S   + LP
Sbjct: 672 SMHMESTLKVREKTKRRGVESSNVKLLP 699


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 32   SVKPEILSVFGDIALSIGSDFGKYFDVVMQMLL 130
            SVK  ++ V  D+  +IG+DF KY   ++  LL
Sbjct: 1051 SVKMVVIEVLTDMGTAIGNDFSKYTGELIPYLL 1083


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 32   SVKPEILSVFGDIALSIGSDFGKYFDVVMQMLL 130
            SVK  ++ V  D+  +IG+DF KY   ++  LL
Sbjct: 1051 SVKMVVIEVLTDMGTAIGNDFSKYTGELIPYLL 1083


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 292 RAIVNFMIQVANEEDRTDAQ--DGGHI-GXHGATLLNAFGAHVLAPCSTPKPVHRHAARL 462
           +A+V+ ++    ++ R +    D  H+ G HGAT+        LAP   P+P HR+A   
Sbjct: 305 KALVHDVVDYVQKKKRREVPIADTFHVDGYHGATMS-------LAPPPEPEPEHRNADGS 357

Query: 463 APAAS 477
           AP  S
Sbjct: 358 APGPS 362


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 496 GCAAHAGKPPAPTLQHVGEPALVSSMGQARAPRTRLVKSPHXP 368
           G A  AG P  P     G+P    S G+A AP T+   +P  P
Sbjct: 171 GPAGEAGPPGPPGPD--GKPGAAGSDGEAGAPGTKTTNAPGEP 211


>AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical
           protein Y46H3C.4 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 476 PRVGGATKERFPIXGEPKRECVRVKAEPFPLC-QAEFWNLXGPTS 607
           PR   ATK ++    +PKRE  RVK EP  L  QA+  +  G TS
Sbjct: 509 PRFDAATKAKYEKMTQPKRE--RVKKEPKKLAWQADCDDDVGVTS 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,547,543
Number of Sequences: 27780
Number of extensions: 335881
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)