BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0139 (760 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 51 1e-06 AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical... 33 0.22 U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 4.7 U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 29 4.7 AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 4.7 AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 6.3 AC006776-1|AAF60626.2| 616|Caenorhabditis elegans Hypothetical ... 28 6.3 >AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta family protein 1 protein. Length = 896 Score = 50.8 bits (116), Expect = 1e-06 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Frame = +2 Query: 8 LGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQV--DHNDYDMVEY 181 L P + R+VK I+ F DIA++I + F +Y V+ +L A NA V D ND D V+Y Sbjct: 710 LQSPRLDRNVKVVIIGTFADIAMAIEAHFERYVGSVVPILNNAQNAAVVTDPNDDDQVDY 769 Query: 182 LGELRE 199 + LRE Sbjct: 770 VDRLRE 775 >AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical protein F52C6.14 protein. Length = 779 Score = 33.1 bits (72), Expect = 0.22 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = +1 Query: 304 NFMIQVANEEDRTDAQDGGHIGXHGATLLNAFGAHVLAPCSTPKPVHRHAARLAPAASPR 483 NFM+ + N R ++G + F LA STP V R +R P + + Sbjct: 612 NFMMALVNTNLRKQLREGAEELPGNVVKVKNFLKEYLAESSTPTLVERADSRDQPLTARQ 671 Query: 484 GRRNQRTLPXXGRTKKR-MRSRQSRTLP 564 + TL +TK+R + S + LP Sbjct: 672 SMHMESTLKVREKTKRRGVESSNVKLLP 699 >U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363, isoform b protein. Length = 2692 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 32 SVKPEILSVFGDIALSIGSDFGKYFDVVMQMLL 130 SVK ++ V D+ +IG+DF KY ++ LL Sbjct: 1051 SVKMVVIEVLTDMGTAIGNDFSKYTGELIPYLL 1083 >U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363, isoform a protein. Length = 2695 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 32 SVKPEILSVFGDIALSIGSDFGKYFDVVMQMLL 130 SVK ++ V D+ +IG+DF KY ++ LL Sbjct: 1051 SVKMVVIEVLTDMGTAIGNDFSKYTGELIPYLL 1083 >AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical protein Y49F6B.9 protein. Length = 382 Score = 28.7 bits (61), Expect = 4.7 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = +1 Query: 292 RAIVNFMIQVANEEDRTDAQ--DGGHI-GXHGATLLNAFGAHVLAPCSTPKPVHRHAARL 462 +A+V+ ++ ++ R + D H+ G HGAT+ LAP P+P HR+A Sbjct: 305 KALVHDVVDYVQKKKRREVPIADTFHVDGYHGATMS-------LAPPPEPEPEHRNADGS 357 Query: 463 APAAS 477 AP S Sbjct: 358 APGPS 362 >AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein 102 protein. Length = 460 Score = 28.3 bits (60), Expect = 6.3 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -1 Query: 496 GCAAHAGKPPAPTLQHVGEPALVSSMGQARAPRTRLVKSPHXP 368 G A AG P P G+P S G+A AP T+ +P P Sbjct: 171 GPAGEAGPPGPPGPD--GKPGAAGSDGEAGAPGTKTTNAPGEP 211 >AC006776-1|AAF60626.2| 616|Caenorhabditis elegans Hypothetical protein Y46H3C.4 protein. Length = 616 Score = 28.3 bits (60), Expect = 6.3 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +2 Query: 476 PRVGGATKERFPIXGEPKRECVRVKAEPFPLC-QAEFWNLXGPTS 607 PR ATK ++ +PKRE RVK EP L QA+ + G TS Sbjct: 509 PRFDAATKAKYEKMTQPKRE--RVKKEPKKLAWQADCDDDVGVTS 551 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,547,543 Number of Sequences: 27780 Number of extensions: 335881 Number of successful extensions: 958 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 958 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1809061256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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