Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0138
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.51 
SB_2418| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         28   8.3  
SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63)                    28   8.3  
SB_42323| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/65 (21%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 219 MSITVILDLKVVSYNQYFNYGT-IWNPRICDMIIILLNLNHEVVLLTKNVVLLCIPKKIN 395
           + + +I  + +++   Y N+ + I    I D+III + + +  ++   N++++ I   IN
Sbjct: 48  IDVIIITIINIITIINYINHNSNIIITTIIDIIIITITIINNNIITIINIIVIAIIYNIN 107

Query: 396 FNTSL 410
           +N+++
Sbjct: 108 YNSNI 112


>SB_2418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 120 NLRTEFRKTSK*INTF*SFQSQDHR 46
           NL TE+RKTSK    F +FQ+  +R
Sbjct: 10  NLTTEYRKTSKRRKCFRTFQTNSYR 34


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 485  FIPWYLIFEVDLILQSSISPVKALLK 408
            F+PW LI E+  +L  SI+P+   LK
Sbjct: 1034 FMPWRLISELSFLLVRSIAPLGKSLK 1059


>SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63)
          Length = 201

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 570 LMFLKIFLFAKENI*LFFPFLNKSTRILVYTVVF 469
           L FLKI ++  +N  LFF F+  +TRI   +  F
Sbjct: 47  LQFLKIDIWRNKNKSLFFGFIRTTTRIHACSCAF 80


>SB_42323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +3

Query: 285 IWNPRICDMIIILLNLNHEVVLLTKNVVLLCIPKKINFNTSL**SLNWAYRRLKYEIYLK 464
           IW+ +IC  ++  + +  E++ +T  V+LL +   ++F+  +   +N     L+ E Y K
Sbjct: 103 IWHMKICVAVVSSIKVLLEILGVTLAVILLQLVIAVSFSFFISRKINEERSSLRKEFYSK 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,241,698
Number of Sequences: 59808
Number of extensions: 371347
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)