Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0137
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.83
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.83
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.83
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.83
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.83
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.83
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.83
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.83
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.83
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.83
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.83
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 27 1.9
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 5.8
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 5.8
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 26 5.8
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 7.7
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403
Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
L ++ R YP P +++ N + G ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 369 SDDYGDVHIPNKDISMYVSTK 431
SDD GD+++P K + ++ TK
Sbjct: 192 SDDSGDIYLPVKKVGKFIPTK 212
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 679 YKSIFLLAIEGILSFGSIAHKLLSR 605
Y++ FLL+ + + SF ++AH LSR
Sbjct: 785 YRTRFLLSRKRVRSFQAVAHGFLSR 809
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -2
Query: 326 DGICNW---HIFIIYSQINDIYLDYGLLISSVRLISVTSMFSVSSKGFSREVLLSELSKS 156
DGI W IN IYL + VR+ S+ ++++ GF + + S + K
Sbjct: 223 DGIITWIQNSSDFALKTINQIYLYFSYPSCLVRVYSIGIIYNIYQSGFVNKKMES-VVKG 281
Query: 155 VFIFAGF 135
+ +F F
Sbjct: 282 ISLFDSF 288
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 432 VPPILNEDLDFDNLKGKDKVCRK 500
V P+ NED++ K K+ +C+K
Sbjct: 98 VYPLPNEDVEMHEAKKKENICKK 120
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 5.8
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -2
Query: 311 WHIFIIYSQINDIYLDY----GLLISSVRLISVTSMFSVSSKGFSREVLLSELSKS 156
W I I+ S I+ Y GL+ + V L+ V ++SV + GF R++ L LS S
Sbjct: 446 WIIIILISLFVIIFTSYCDSDGLIGNCVLLVYVDGLWSVKTNGF-RQLSLFILSFS 500
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 234 QSHGGNQETVVQIDVIDLTINDKNVPVANAICENIVMANVTGFSVSDDYG 383
+ H G+Q + V + +D V N + + + +N FS++DDYG
Sbjct: 26 EEHSGSQTKNYPVVVKCIQEHDP-VDTTNVLVADDLDSNFEPFSITDDYG 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,608
Number of Sequences: 5004
Number of extensions: 57368
Number of successful extensions: 164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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