Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0137
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)                    29   3.5  
SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)                    29   4.6  
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               28   6.1  
SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)            28   8.1  

>SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/29 (41%), Positives = 23/29 (79%)
 Frame = +3

Query: 582 REIQKNMSRDKSLWAIDPKDKMPSMARRK 668
           RE +K  SR ++L+ +DPKD++P++ +R+
Sbjct: 280 RESRKEPSRGEALF-VDPKDQLPNLYKRQ 307


>SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)
          Length = 481

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 387 VHIPNKDISMYVSTKVPPILNEDLDFDNLKGKDKVC 494
           V I  KDI   +STK+  I    L+  +LK K K C
Sbjct: 403 VQIQAKDIEAQISTKLKEIERMKLEVSSLKNKRKRC 438


>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1328

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 70  EKSLPNADVYESDSSHSENVKEKPAKINXXXXXXXXXXXXEKPLEETENIDVTEINRTEE 249
           +K  P  +++E    + + +KEKP   N            +  +EET N + TE + T++
Sbjct: 562 KKQCPLVELFER-RRYLDAIKEKPVSANSTQTDTAQDGTTKTEIEETSNSEPTEKSHTDK 620


>SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)
          Length = 706

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/49 (18%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 422 NIHGYVLVGYMHISIVIRDTKARDIGHNYVLTDGICNWHIFI--IYSQI 282
           ++H  + +G+  +   +R      +G+N+ ++  +C W   +  +++QI
Sbjct: 98  DVHVVIYIGFGFLMTFLRKYSFSALGYNFFISAPVCQWATIVTGVFNQI 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,973,135
Number of Sequences: 59808
Number of extensions: 405376
Number of successful extensions: 981
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)