Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0137
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03000.2 68417.m00408 expressed protein contains similarity t...    29   2.9  
At4g03000.1 68417.m00407 expressed protein contains similarity t...    29   2.9  
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    28   5.0  
At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family pr...    28   6.6  
At5g38130.1 68418.m04594 transferase family protein similar to a...    27   8.8  
At4g18200.1 68417.m02705 purine permease family protein similar ...    27   8.8  
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    27   8.8  
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa...    27   8.8  

>At4g03000.2 68417.m00408 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +3

Query: 432 VPPILNEDLDFDNLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIREIQKNMSRD 611
           V  I+N+ L F  LK   KV   R Y   ++E   +     +  E+ S++RE++ ++S D
Sbjct: 140 VSNIVNDTLSF--LKSGKKVAGSRDY---VFE-DLQQLVAYSLVEKISLVREVRPSLSTD 193

Query: 612 KSLWAI 629
           +++W +
Sbjct: 194 EAMWRL 199


>At4g03000.1 68417.m00407 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +3

Query: 432 VPPILNEDLDFDNLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIREIQKNMSRD 611
           V  I+N+ L F  LK   KV   R Y   ++E   +     +  E+ S++RE++ ++S D
Sbjct: 140 VSNIVNDTLSF--LKSGKKVAGSRDY---VFE-DLQQLVAYSLVEKISLVREVRPSLSTD 193

Query: 612 KSLWAI 629
           +++W +
Sbjct: 194 EAMWRL 199


>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1322

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
 Frame = -2

Query: 284 INDIYLDYGLLISSVRLISVTSMFSVSSKGFSREVL-LSELSKSVFIFAG-------FSF 129
           +N +Y+ YGL   S+R++++ +      +G S+ V  ++  ++ V + A        F +
Sbjct: 190 VNKVYICYGLKGGSIRVLNINTALRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVW 249

Query: 128 TFSEWLESDS*TSALGKL 75
             SE  E D  +   GK+
Sbjct: 250 KISEGSEGDEQSQITGKI 267


>At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 264

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +1

Query: 535 GKILQ*KLGRRELQSFVKSKKICLVTRACGRLIQKTRCL 651
           G+ +Q  LG +E+Q  + ++++C+V R   ++++   C+
Sbjct: 206 GREMQFLLGSQEIQEKLSTEEVCVVPREMVQVLKAEECI 244


>At5g38130.1 68418.m04594 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 462

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 347 GHNYVLTDGICNWHIFIIYSQI 282
           G+N+++ DG C W  F  +S+I
Sbjct: 182 GYNHMVADGTCFWKFFHTWSKI 203


>At4g18200.1 68417.m02705 purine permease family protein similar to
            purine permease [Arabidopsis thaliana] GI:7620007;
            contains Pfam profile PF03151: Domain of unknown
            function, DUF250
          Length = 1128

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -2

Query: 293  YSQINDIYLDYGLLISSVRLISVTSMFSVSSKGFSREVLLSELSKSVFIFAGFSFTFSEW 114
            ++ +  +YL  GLL+S+   +S   +  +    FS  +L S+L+ + F        FS +
Sbjct: 861  FTTLASVYLCTGLLVSAYAYLSAVGLLYLPVSTFSL-ILASQLAFTAF--------FSYF 911

Query: 113  LESDS*TSAL-GKLFSVTTYEVLLLFDSINE 24
            L S   T  +   LF +T    LL+ ++ +E
Sbjct: 912  LNSQKFTPLIVNSLFLLTVSSALLVVNTDSE 942


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 628 IAHKLLSRDIFFWISRMIEVLSAPAFIVEFFHFSS*RGQGYLRFLQTLSLPFKLSKS 458
           IA +   RD++ + SR  +V      +      S  RG GY+ F  T+S+P  ++ S
Sbjct: 189 IALRATERDVYEFFSRAGKVRDVRIIMDRISRRS--RGIGYVEFYDTMSVPMAIALS 243


>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 441

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 567 SPPQLSL*NFSISARKEVKDTFASCKLCLYLSNYQN 460
           SPP  SL   SISA  E K    +CK C +L+ Y+N
Sbjct: 50  SPPPPSL---SISANDEAK---WACKACTFLNTYKN 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,457
Number of Sequences: 28952
Number of extensions: 291658
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)