Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0134
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   3.5  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.6  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   6.1  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   6.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.0  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   8.0  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   8.0  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 576 RTALPSVRLPGVASSEQNLHRLLGSSYGEQRAATGGAHWTN 698
           RT  P V   G A+  Q LH L  S     +  TG   WT+
Sbjct: 666 RTDEPYVSTEGKATGFQQLHPLALSDNSSNQIFTGAWEWTS 706


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 531 FPWSLNVGTAPCFLQSTCSGSFTLAGDMN 445
           +PWS  V     +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 488 WRKHGAVPTFKDQGKCGSCWSFQHDWELWKDSTSVSP 598
           W ++  +P F DQ K G   S     ELW DS   SP
Sbjct: 519 WNEYAFIPVFPDQVKAGEKISI----ELW-DSDRFSP 550


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 527 GKCGSCWSFQHDWELWK 577
           G C  CW     W LWK
Sbjct: 338 GNCVVCWGRTGGWRLWK 354


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 332 CSCPACKKRGPFRTSG 285
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 450  MNLAPRTLPPFMYRFLLCLAVLLKPFI 370
            M++AP  L   +  F  CL ++L+P +
Sbjct: 1482 MSVAPLVLSAIIAFFFFCLGIMLRPIL 1508


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = -2

Query: 692 PMSPPGCSPLFPVTAPEQSMKVLLRRSDTR*PD*RKCCPS 573
           P  PP  SPL P    E S  + L    T     RK  PS
Sbjct: 123 PELPPSSSPLLPPNGSESSSPIPLSLLSTSSLQQRKITPS 162


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +1

Query: 154  SSLTWSRKSGVPSSCSTV-STTKARSKTISA 243
            SSL+ S  SG+ SS ST+ S+T++ S + SA
Sbjct: 983  SSLSSSTTSGLTSSSSTIPSSTRSESNSESA 1013


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -1

Query: 615 KRHQVAGLTEVLSFQSSQSC*KDQHEP-----HFPWSLNVGTAP 499
           +R  +AGLTE+   Q  Q    ++H P      FP S ++G+ P
Sbjct: 392 RRQLIAGLTELALQQQPQGRSPNEHSPSNHPEDFPPSFSLGSNP 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,159
Number of Sequences: 5004
Number of extensions: 59977
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)