Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0132
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 204 6e-54
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 198 6e-52
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 170 2e-43
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 125 6e-30
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 117 2e-27
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 108 8e-25
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 105 4e-24
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 105 5e-24
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 98 8e-22
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 85 6e-18
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.3
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 4.0
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.0
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 25 7.1
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 25 7.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 7.1
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.3
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 204 bits (499), Expect = 6e-54
Identities = 91/113 (80%), Positives = 97/113 (85%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 433
+YVDRGKQSLE ICLLLAYKIKYPENFF+LRGNHECASINRIYGFYDECKRRYNIKLWKT
Sbjct: 91 DYVDRGKQSLEVICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKT 150
Query: 434 FTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGL 592
FTDCFNCLP+AAI+DEKIF HGGL ++ MRPTDVPD GLLC L
Sbjct: 151 FTDCFNCLPIAAIIDEKIFTMHGGLSPDLNSMDQIQRIMRPTDVPDTGLLCDL 203
Score = 146 bits (354), Expect = 2e-36
Identities = 65/84 (77%), Positives = 77/84 (91%)
Frame = +3
Query: 3 NIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHG 182
++D++I +LL+VRG +PG VQL+E EI+ LC K+REIF+SQPILLELEAPLKICGDIHG
Sbjct: 7 DLDSIIDRLLEVRGSRPGRQVQLSEDEIRFLCNKAREIFISQPILLELEAPLKICGDIHG 66
Query: 183 QYYDLLRLFEYGGFPPESNYLFLG 254
QYYDLLRLFEYGGFPPE+NYLFLG
Sbjct: 67 QYYDLLRLFEYGGFPPEANYLFLG 90
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 198 bits (483), Expect = 6e-52
Identities = 87/113 (76%), Positives = 96/113 (84%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 433
+YVDRGKQSLE ICLL AYKIKYPENFFLLRGNHE ASINRIYGFYDECKRRY+IKLWKT
Sbjct: 88 DYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNHEFASINRIYGFYDECKRRYSIKLWKT 147
Query: 434 FTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGL 592
FTDCFNC+PVAA++DEKIFC HGGL ++ +RPTD+PD GLLC L
Sbjct: 148 FTDCFNCMPVAAVIDEKIFCMHGGLSPDLNSLDQIQRIIRPTDIPDTGLLCDL 200
Score = 133 bits (321), Expect = 2e-32
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +3
Query: 3 NIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHG 182
+ID +I+KL+K R KP VQL++ EI+ LC SR IFLSQP+LLELEAPLKICGDIHG
Sbjct: 4 DIDAIIEKLVKARNGKPSKQVQLSDAEIRYLCTTSRSIFLSQPMLLELEAPLKICGDIHG 63
Query: 183 QYYDLLRLFEYGGFPPESNYLFLG 254
QY DLLRLFEYGG+PP++NYLFLG
Sbjct: 64 QYSDLLRLFEYGGYPPDANYLFLG 87
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 170 bits (413), Expect = 2e-43
Identities = 76/110 (69%), Positives = 87/110 (79%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 433
+YVDRGKQSLETI LL YKI+YPENFFLLRGNHECA+I R+YGFYDECKRR NIK+WKT
Sbjct: 276 DYVDRGKQSLETILLLFLYKIRYPENFFLLRGNHECANITRVYGFYDECKRRCNIKIWKT 335
Query: 434 FTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLL 583
F + FNCLP+A++V KIFC HGGL + + RPTDVPD GLL
Sbjct: 336 FINTFNCLPIASVVAGKIFCVHGGLSPSLSHMDDIREIPRPTDVPDYGLL 385
Score = 102 bits (244), Expect = 5e-23
Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 NIDNVIKKLLKVR-GEKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIH 179
N+D +I++L+ V K +V L EI +C+ REIFLSQP LLEL P+KI GD+H
Sbjct: 191 NVDEMIQRLIHVGYSRKSSKSVCLKNAEITSICMAVREIFLSQPTLLELTPPVKIVGDVH 250
Query: 180 GQYYDLLRLFEYGGFPPESNYLFLG 254
GQY DL+RLFE GFPP SNYLFLG
Sbjct: 251 GQYSDLIRLFEMCGFPPSSNYLFLG 275
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 125 bits (301), Expect = 6e-30
Identities = 57/124 (45%), Positives = 82/124 (66%), Gaps = 2/124 (1%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWK 430
+YVDRG S+ET+ LL+A+KI+YP+ +LRGNHE I ++YGFYDEC R+Y N +W+
Sbjct: 85 DYVDRGYHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWQ 144
Query: 431 TFTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGLC-SGPX 607
FTD F+ LP+ A+++++IFC HGGL + + R +VP +G +C L S P
Sbjct: 145 YFTDLFDYLPLTALIEDRIFCLHGGLSPSIDTLDHVRILDRVQEVPHEGPICDLLWSDPD 204
Query: 608 PRQG 619
R G
Sbjct: 205 DRPG 208
Score = 62.5 bits (145), Expect = 5e-11
Identities = 24/62 (38%), Positives = 42/62 (67%)
Frame = +3
Query: 69 LTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 248
L+E ++ +C ++E+ + + + P+ +CGDIHGQ++DL+ LF GG P++NYLF
Sbjct: 23 LSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLF 82
Query: 249 LG 254
+G
Sbjct: 83 MG 84
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 117 bits (281), Expect = 2e-27
Identities = 54/124 (43%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWK 430
+YVDRG S+ET+ LL+A K++YP +LRGNHE I ++YGFYDEC R+Y + +WK
Sbjct: 98 DYVDRGYHSVETVSLLVAMKLRYPNRITILRGNHESRQITQVYGFYDECLRKYGSANVWK 157
Query: 431 TFTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGLC-SGPX 607
FT+ F+ P+ A+++++IFC HGGL + + R +VP +G +C L S P
Sbjct: 158 HFTNLFDYFPLTALIEDRIFCLHGGLSPSIDSLDHVRTLDRVQEVPHEGPMCDLLWSDPD 217
Query: 608 PRQG 619
R G
Sbjct: 218 DRCG 221
Score = 68.5 bits (160), Expect = 8e-13
Identities = 27/62 (43%), Positives = 44/62 (70%)
Frame = +3
Query: 69 LTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 248
L+E +++ LC K+RE+ + + + P+ +CGDIHGQ++DL+ LF+ GG P+ NYLF
Sbjct: 36 LSEADVEMLCDKAREVLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKIGGDVPDMNYLF 95
Query: 249 LG 254
+G
Sbjct: 96 MG 97
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 108 bits (259), Expect = 8e-25
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWK 430
+YVDRG S+ETI LL+ K++YP+ LLRGNHE I + YGFY EC R+Y N +WK
Sbjct: 79 DYVDRGYYSIETITLLICLKLRYPKRITLLRGNHESRGITQTYGFYSECLRKYGNANVWK 138
Query: 431 TFTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGLC-SGPX 607
FTD F+ L ++A +D+ IFC HGGL + + ++ R + P +G + L S P
Sbjct: 139 YFTDIFDFLTLSATIDDTIFCVHGGLSPSIQHIDQILVLDRFREFPHEGPMADLVWSDPD 198
Query: 608 P 610
P
Sbjct: 199 P 199
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +3
Query: 3 NIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHG 182
++DN+I++L + + + E I LC ++E+ + + ++ L P+ + GDIHG
Sbjct: 3 DLDNIIERLYEKQ--------LIAESVIAYLCSLAKEVLMQESNVVRLSTPITVVGDIHG 54
Query: 183 QYYDLLRLFEYGGFPPESNYLFLG 254
Q+ DLL +F GG P +NYLFLG
Sbjct: 55 QFDDLLEIFRIGGPCPYTNYLFLG 78
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 105 bits (253), Expect = 4e-24
Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWK 430
++VDRG S+ET LLL K KYP+ L+RGNHE I ++YGFYDEC R+Y + +W+
Sbjct: 81 DFVDRGFYSVETFLLLLTLKCKYPKEMTLIRGNHESRQITQVYGFYDECVRKYGSANVWR 140
Query: 431 TFTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGL 592
+ F+ L + A+VD K+FC HGGL + ++ R +VP +G +C L
Sbjct: 141 YCCEIFDYLSLGALVDGKVFCVHGGLSPSISSIDQIRLLDRKQEVPHEGAMCDL 194
Score = 62.1 bits (144), Expect = 7e-11
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +3
Query: 69 LTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 248
+ E + LC + R+I + + + + +P+ ICGDIHGQ +DLL LF GG P + YLF
Sbjct: 19 IPESNVVELCQRVRDILIEESNIQWISSPVTICGDIHGQLHDLLELFRIGGSCPGTKYLF 78
Query: 249 LG 254
LG
Sbjct: 79 LG 80
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 105 bits (252), Expect = 5e-24
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWK 430
++VDRG SLET L + K +YP+ LLRGNHE I ++YGFYDEC+ +Y N +WK
Sbjct: 79 DFVDRGYFSLETFTLFMLLKARYPDKITLLRGNHESRQITQVYGFYDECQTKYGNANVWK 138
Query: 431 TFTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGL 592
F+ L +AA++D KI C HGGL + ++ R ++P +G C L
Sbjct: 139 YCCQVFDFLTLAAVIDNKILCVHGGLSPEVRTLDQIRILARAQEIPHEGSFCDL 192
Score = 65.7 bits (153), Expect = 5e-12
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +3
Query: 69 LTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 248
L E ++K LC + I + + + + P+ +CGDIHGQ+YDLL LF GG P +NY+F
Sbjct: 17 LPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPSTNYIF 76
Query: 249 LG 254
+G
Sbjct: 77 MG 78
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 98.3 bits (234), Expect = 8e-22
Identities = 48/113 (42%), Positives = 66/113 (58%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 433
+YVDRG S+E + L A KI YP+ +LLRGNHECA + + F EC +YNIK+++
Sbjct: 147 DYVDRGYFSIECLLYLWALKIWYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKVYEA 206
Query: 434 FTDCFNCLPVAAIVDEKIFCCHGGLRRTCKLWNRSGGSMRPTDVPDQGLLCGL 592
FN LP+AAI++++ C HGGL N R + P GL+C L
Sbjct: 207 CLQSFNALPLAAIMNKQFLCVHGGLSPELHTLNDIRMINRFCEPPTHGLMCDL 259
Score = 74.1 bits (174), Expect = 2e-14
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +3
Query: 66 QLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 245
+L+E + + K+ EI S+ L+E++AP+ +CGDIHGQYYDL++LFE GG P + YL
Sbjct: 84 RLSEEQTLYIIKKATEILKSEDNLIEVDAPVTVCGDIHGQYYDLMKLFEVGGNPANTQYL 143
Query: 246 FLG 254
FLG
Sbjct: 144 FLG 146
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 85.4 bits (202), Expect = 6e-18
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +2
Query: 254 NYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 433
++VDRG S E L AYK+ YP+ F+ RGNHE +N++YGF EC+ +YN + +
Sbjct: 246 DFVDRGSWSTEVAFTLYAYKLLYPDAVFINRGNHETDDMNKVYGFEGECRSKYNERTFNI 305
Query: 434 FTDCFNCLPVAAIVDEKIFCCHGGL 508
F++ F+ LP+ +++ + HGGL
Sbjct: 306 FSETFSLLPLGSLISDSYLVVHGGL 330
Score = 45.6 bits (103), Expect = 6e-06
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Frame = +3
Query: 108 REIFLSQPILLEL----EAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLG 254
+E+ P L+++ + L ICGD HGQY+DLL +F+ G P P + YLF G
Sbjct: 192 KELLEKTPSLIDIPVKGDETLVICGDTHGQYFDLLNIFKLHGPPSPTNKYLFNG 245
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 33 KVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGD 173
+V G K MNV ++ ++ K R++ + P+ +E L IC D
Sbjct: 164 RVEGLKRTMNVDISVSYLEIYNEKIRDLLVQDPLSMEKPKSLNICED 210
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 317 KYPENFFLLRGNHECASINRI--YGFYD-ECKRRYNIKLWKTFTDCFNCLP 460
+Y + + LL+ + + I + + F D K Y +K W+ F CLP
Sbjct: 144 EYADKYRLLKNHKNVSGIVKATHFAFADIPEKSEYTLKQWRIFEKAAGCLP 194
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 175 MSPQIFKGASSSSSIGCDKNISLD 104
+S Q+FK SS S + CD+ ++D
Sbjct: 567 VSVQVFKDGSSDSEVRCDEYAAVD 590
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 364 GTLVVSA*KKEILGIFNLVGEEQAYCFQRLLATVH 260
G+L+ K ++NL G YCF RL T++
Sbjct: 987 GSLLDDGTKLSDRSVYNLFGNMSLYCFFRLFHTLY 1021
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 175 MSPQIFKGASSSSSIGCDKNISLDFKHSPLISISVN*TFIPGFSPRTFS 29
+SP F + +I +++SL K P+++ S + + PGFS TF+
Sbjct: 266 ISPASFGSGIRTRNIFNPESMSLGLK-PPILNRSYSASMAPGFSMNTFT 313
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 225 PPESNYLFLGTMWTVASSRWK 287
PP + Y+ LGT++T + W+
Sbjct: 12 PPVTRYIVLGTLFTTLAVYWR 32
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 270 PRST*FRGRDSWTPEGSH 217
P ST FR R SW+P+G H
Sbjct: 222 PLSTYFR-RPSWSPDGKH 238
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 198 RGHSIVHVCHRKFSKELQV 142
RG HVCHRK + L+V
Sbjct: 55 RGFRTCHVCHRKNNMRLKV 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,797
Number of Sequences: 5004
Number of extensions: 60759
Number of successful extensions: 181
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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