Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0130
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    29   0.55 
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   1.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   3.9  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   6.8  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   6.8  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   9.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.0  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 430 RLPIDAPAQHADDSMDPLDVPQGSTASQRTGPDMVGIPGTGT 555
           RLP D P    DD++  L     S A Q TG   +    TGT
Sbjct: 253 RLPHDPPDLEGDDNIPDLPKRPASIAPQPTGASTIAPQPTGT 294


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 464 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 339
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 447 SIDGQSPHVVKSRIKWQTGAHPQ--KHVCAEVITRCPEVI 334
           SIDG   HVV+    W  G H Q  + V A ++   PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 607 QWEGRNFERDASPLVHDVFPFLE 539
           +WEG  +E+ A  ++  + P+LE
Sbjct: 596 KWEGPQYEKWALKVIDSILPYLE 618


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 492 WYV*RVHAVISMLGRSIDGQS 430
           WYV R HA IS+  +S DG +
Sbjct: 55  WYVNRRHAPISVYFKSTDGHT 75


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 465 ISMLGRSIDGQSPHVVKSRIKWQTG 391
           I  +G  +D   P   K   KWQTG
Sbjct: 59  IPFMGSFLDSMKPTFEKYNAKWQTG 83


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 193 DESVQPRAQLFPVLSVLQIISLQLASFETKEKADSITTYLTN 318
           +E  Q R++L  +     I+SLQL+S   K+K  S  T LT+
Sbjct: 137 NELKQVRSKLAALEHENGILSLQLSSSNKKDKNTSSVTTLTS 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,992
Number of Sequences: 5004
Number of extensions: 57290
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)