Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0130
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              29   3.1  
SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)              28   5.4  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   5.4  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 477 PSRRTTRKHCFTTHRPRHGRYSRNGNTSWTNGLASRSKFRPSHWEPQH 620
           P RR  R    +  R RH    RNGN    +   SRS   P+  +PQH
Sbjct: 156 PERRRERSFSNSPKRERHSPDHRNGNEGTRDRSQSRSP-TPAKADPQH 202


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 478 PLDVPQGSTASQRTGPDMVGIPGTGTRHGLMGLHRAQ--SSDLPTG 609
           P+   Q +++S  TG     IP TG +  +  +HRAQ  SS  PTG
Sbjct: 834 PIHRAQRASSSHPTGTKGKFIPSTGHKGQVHPIHRAQRASSSHPTG 879


>SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
 Frame = +1

Query: 346 TSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAPAQHADDSMDPLDVPQGSTASQRTGP 525
           T G+ + +D+      G+P N        +P D      D     L   +G         
Sbjct: 133 TRGDGMPSDLHTTRGDGMPSNLHTTRGDGMPSDLHTTRGDGMKSDLHTTRGDGMPSDLHM 192

Query: 526 DMV--GIPGTGTRHGLMGLHRAQSSDL 600
             V  G   T T+ G+MG HR  SSD+
Sbjct: 193 TWVLTGCHRTRTQQGVMGCHR--SSDI 217


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 508  SQRTGPDMVGIPGTGTRH 561
            SQ  G    GIPGTGTRH
Sbjct: 1433 SQNMGNQKHGIPGTGTRH 1450


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +1

Query: 211  RAQLFPVLSVLQIISLQLASFETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMS 390
            R +  PVLS L    + + S  TK+ A+ +T  L     +       G    +     + 
Sbjct: 1075 RLREVPVLSTLFRSEVHVVSTPTKDAAEFVTIQLKVKENSAQQMQIEGTFFSSGQ--TVK 1132

Query: 391  TGLPFNATFNYM-RRLPIDA 447
               P N TFNY  R+L I+A
Sbjct: 1133 RDFPINITFNYQTRQLIIEA 1152


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 466 DSMDPLDVPQGSTASQRTGPDMVGIPGTGTRHG 564
           ++MD  +     T+S   G D +G+PG+ +R G
Sbjct: 753 NAMDASNSDTRETSSHAIGSDQIGLPGSDSRTG 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,637,121
Number of Sequences: 59808
Number of extensions: 500511
Number of successful extensions: 1224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)