Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0130
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17190.1 68415.m01985 ubiquitin family protein contains INTER...    31   0.63 
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di...    31   0.83 
At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    27   7.7  
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit...    27   7.7  

>At2g17190.1 68415.m01985 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 538

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 439 IDAP-AQHADDSMDPLDVPQGSTASQRTGPDM--VGIPGTGTRHGLMGLHRAQSSDLPTG 609
           I AP A+    + +PL  P G+TA Q T P     G+ G G   GL GL     +D P G
Sbjct: 302 ISAPNAETGTPNANPLPNPWGATAGQTTAPGRTNAGLGGLGGLGGLGGLGML-GADSPLG 360

Query: 610 S 612
           +
Sbjct: 361 A 361


>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
           Dictyostelium discoideum, DDU66526
          Length = 983

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 418 NYMRRLPIDAPAQHADDSMDPLDVPQGSTASQRTGPDMVGIPGTGTRHGLMGL 576
           N  R+  +++ A   D +M  LD+  GS+     G   +GIPGT T     G+
Sbjct: 846 NIARKAELESAA--VDGTMVTLDLTSGSSVEIPVGARFIGIPGTETAENPRGV 896


>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 394 RCSSTKTCL----CRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRT 269
           + S  KTCL    C G+Y   +S++C    +L +S +NL + SS T
Sbjct: 356 KSSCAKTCLGNSSCVGFYHKEKSNLC---KILLESPNNLKNSSSET 398


>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
           to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
           GI:9937505; contains Pfam profiles PF00240: Ubiquitin
           family, PF00627: UBA/TS-N domain
          Length = 551

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 475 DPLDVPQGSTASQRTGPDMVGIPGTGTRHGLMGL 576
           +PL  P G+T  Q T P    + G     GL GL
Sbjct: 321 NPLPNPWGATGGQTTAPGRTNVGGDARSPGLGGL 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,502
Number of Sequences: 28952
Number of extensions: 314792
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)