Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0129
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    31   0.16 
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    28   1.5  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.6  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   3.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.5  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    26   4.5  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    25   7.9  

>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 530 CGLCRTYHHQNCKQFRKK 477
           C LC T++H+NCK+  KK
Sbjct: 257 CQLCDTFYHKNCKEHAKK 274


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 380 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNSDDGMFDKDRNG 535
           + ++ F   D+DQ G ITS EL   ++ + GQ  S TA    D + + D +G
Sbjct: 13  EFREAFSLFDRDQDGNITSNEL-GVVMRSLGQ--SPTAAELQDMINEVDADG 61



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 380 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSE 487
           +V++ F+  DKD +G+IT  EL   L +  G+  S+
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSL-GERLSQ 120


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 492 LAILMMVCSTKTATGQINLDEFDKLYTYVNQWVSGIQNLRY 614
           + + ++  S K     + LDEF+    Y+NQ++   Q ++Y
Sbjct: 337 IVLNLVKSSEKVKRESLLLDEFESAIQYLNQFLKDSQKIQY 377


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -2

Query: 590 NPLIHVSIKLIKFIEINLPRCGLCRTYHHQNCK 492
           +P  ++S + I +   N  + G C++YH+++C+
Sbjct: 824 DPKTNLSRRYINYKVYNYDQEGQCQSYHYEDCQ 856


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 392 WFRAV-DKDQSGFITSTE-LRSALVNAQ-GQTFSETACNSDDGMFDKDRNGAD 541
           W R V +K+Q    ++ + ++S L N    Q  +ET C SDDG ++ D +  D
Sbjct: 107 WMRHVLEKNQITTKSARQFVKSHLGNCDLEQAENETDCFSDDGEYNSDSSSTD 159


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +2

Query: 254 ALQMAYNSGYPGQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWFRAVDKDQSGFIT 433
           A+ + Y     G+ A+GG     L+   GP   + V G I    + W   +    SG + 
Sbjct: 293 AVLIIYIMKVNGRQAWGGFSREALK-NWGPLCRLAVPGVIMICSEYWAFELVTFASGVLG 351

Query: 434 STELRSALVNAQGQTFS 484
           +TEL S  V +   T S
Sbjct: 352 TTELASMSVLSTTSTLS 368


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 257 LQMAYNSGYPGQAAYGG 307
           +Q  Y+ GYPG   YGG
Sbjct: 61  MQNKYSEGYPGARYYGG 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,331
Number of Sequences: 5004
Number of extensions: 62849
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)