Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0127
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    43   5e-05
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    42   1e-04
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    40   3e-04
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   3.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.5  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   6.0  

>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +2

Query: 344 LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWT 451
           L   ++ +K IVV TGAGIS  AGIPDFR   G+++
Sbjct: 50  LVSAIRKAKRIVVVTGAGISCDAGIPDFRSSEGLFS 85


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +2

Query: 344 LAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVW 448
           +  L+K +K++VV  GAGISTS GI DFR  NG +
Sbjct: 149 VVNLLKKAKNVVVLVGAGISTSLGILDFRSDNGFY 183


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +2

Query: 344 LAQLVKDSK--HIVVHTGAGISTSAGIPDFRGP 436
           +A L+K+ K   I V  GAGIST+AGIPDFR P
Sbjct: 18  VASLIKEGKVKKICVMVGAGISTAAGIPDFRSP 50


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 501 ASANDTLMVGFLPSF----SKVHTPFGPLKSGIPAEVLMP 394
           A+ NDT M  +LP+     + +  PF P  SGIP    +P
Sbjct: 272 ATVNDTSMEYYLPNAYPHPTGISLPFYPFDSGIPVSPNIP 311


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 495  ANDTLMVGFLPSFSKVHTPFGPLKSGIPAEVLMPA 391
            ANDT + G +P+F     P  PL S    + + PA
Sbjct: 932  ANDTSVAGVMPAFPPPPPPPPPLVSAAGGKFVSPA 966


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 513 FWGCASANDTLMVGFLPSFSKVHTPFGPLKSG 418
           F   +S N T   G  P+F    TPFG   SG
Sbjct: 227 FGNASSTNTTSAFGSTPAFGASTTPFGQNLSG 258


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 492 NDTLMV-GFLPSFSKVHTPFGPLKSGIPAEVLMPAPVWTTICLLSF 358
           +DT++V   +     V  PFG L +G+P  + + A       LLSF
Sbjct: 421 SDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQYLNDEDLLSF 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,907
Number of Sequences: 5004
Number of extensions: 69406
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)