Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0127
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403...    48   5e-06
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703...    29   2.7  
09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708...    29   4.7  
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    28   6.2  
02_05_0090 - 25742533-25744557                                         28   6.2  

>12_01_0509 -
           4029739-4029890,4031064-4031208,4031665-4031709,
           4031800-4031899,4032013-4032140,4032548-4032712,
           4033033-4033162,4033252-4033412,4034306-4034351,
           4034429-4034494,4034579-4034664,4035811-4035849
          Length = 420

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +2

Query: 308 DSNDKLNQKCVLLAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWTLEKEGKKPTINV 487
           DS+    +   LL + +  SK ++V TGAG+ST +GIPD+R PNG ++    G KP  + 
Sbjct: 23  DSDPPSAKDVDLLYRFIDQSKKLMVLTGAGMSTESGIPDYRSPNGAYS---SGFKPLTHQ 79

Query: 488 SF 493
            F
Sbjct: 80  EF 81


>04_03_0112 -
           11369013-11369193,11369194-11369354,11370281-11370383,
           11370467-11370534,11372340-11372393,11374173-11374251,
           11376054-11376133,11376584-11376692,11376813-11376913,
           11378407-11378526,11379613-11379642,11380591-11380689
          Length = 394

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +2

Query: 260 LSPYENKGILGVPEKFDSNDKLNQKCVLLAQLVKDSKHIVVHTGAGISTSAGIPDFRGPN 439
           LS  E+ G +G+PE FDS + L++K   LA +V++     V  GA +     +P      
Sbjct: 9   LSYREDVGNVGMPEIFDSPELLHKKIEELAVMVRERSGKGV-PGASLPFHRAVPTLT-HM 66

Query: 440 GVWTLEKEGK 469
            +  LEK G+
Sbjct: 67  ALVELEKTGR 76


>09_04_0744 -
           19867604-19867686,19868075-19869872,19870777-19870801,
           19872313-19872710
          Length = 767

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/77 (29%), Positives = 38/77 (49%)
 Frame = +2

Query: 251 CKGLSPYENKGILGVPEKFDSNDKLNQKCVLLAQLVKDSKHIVVHTGAGISTSAGIPDFR 430
           CKGL   ++ G+ GVP   + N+ L +KC     L++     ++ T   +S  +  P F 
Sbjct: 688 CKGLLDSKD-GLSGVPHLTNLNELLVKKCGEKENLME-----ILQTQ--VSEHSKRPKFL 739

Query: 431 GPNGVWTLEKEGKKPTI 481
               VW + +E K PT+
Sbjct: 740 IEYFVWLVTEESKYPTV 756


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -3

Query: 296 GLLVYLCFHKVIVLCIIARHFWETIYLMVLTQIFIEPLFKFKLRIFFYNMDTEESF*LWK 117
           GLLV  CF+K++V  I ++  W      +L +       K        N +T E +   K
Sbjct: 238 GLLVLQCFYKILVRHIASKSLWNGRSSELLQEYMGANGNKSNFNPEICNPETMEGY---K 294

Query: 116 YLISYTLRKNER 81
           YL+   L+K+ +
Sbjct: 295 YLVYGELQKSRK 306


>02_05_0090 - 25742533-25744557
          Length = 674

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 341 LLAQLVKDSKHIVVHTGAGISTSAGIPDFRGPNGVWTLEKEGKKPTINVSFADAQP 508
           LL+  V  S  I      G S+S G+   R     W+ + +G  P++NVS   A P
Sbjct: 234 LLSAAVNLSAVIEDEAYVGFSSSTGVVASRHYVLAWSFKMDGPAPSLNVSKLPALP 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,397,773
Number of Sequences: 37544
Number of extensions: 379905
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)