Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0127
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 405 VLMPAPVWTTICLLSFTS*AKSTH 334
           +L+   +W T+C+L+    + STH
Sbjct: 321 ILVTLSIWITVCVLNVHFRSPSTH 344



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 682 LADVYHSSNKQYFPCKFQP 626
           + +V  S N++Y+PC  +P
Sbjct: 217 ILEVPASRNEEYYPCCTEP 235


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 80  VAHFFLKYKKLNTSIIRSSLLCPYYK 157
           +  +FL+YKKL     +S L  P  K
Sbjct: 427 ILSYFLRYKKLQPQYSQSELQMPGVK 452


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 80  VAHFFLKYKKLNTSIIRSSLLCPYYK 157
           +  +FL+YKKL     +S L  P  K
Sbjct: 427 ILSYFLRYKKLQPQYSQSELQMPGVK 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,302
Number of Sequences: 438
Number of extensions: 4224
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)