Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0126
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    27   1.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.5  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    26   5.9  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   7.9  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    25   7.9  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   7.9  

>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 365 ILQFTTKMSGSLHKVPKVDIDKSGVFKYILLKVYDQEVDGVEPSTIVLEDIRDGNYHSD 541
           IL+F  + SG+LH+ P  + +      ++ L +Y  +VD    +    + +    + SD
Sbjct: 109 ILKFE-RSSGTLHEAPSTEDENEFTDDFLELTLYVTDVDSCYQALCTCQSLHPDTFSSD 166


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 407 LCGVSQTFLW*IVILALINLG 345
           LCG SQ  +W IV  A+  LG
Sbjct: 177 LCGASQNMIWLIVCRAIQGLG 197


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 596 GGRISHDSRAIKKDTTSMGYSP 661
           G R S  S   ++ TTS GYSP
Sbjct: 55  GSRYSSSSGPYRRSTTSYGYSP 76


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 284 MPFNPFKLFSRPRVNNTKFWNPNLSGPIL 370
           +P NPF  FS       K WN   S P+L
Sbjct: 274 VPNNPFTPFSPINPYYAKSWNHTASAPLL 302


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 527 NYHSDIYDEVQGKLIPFDCEPWGGGRI 607
           NYH+ +Y E + ++IP+ C+  G G I
Sbjct: 213 NYHNLLYREEEREMIPY-CQKTGVGLI 238


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 407 LCGVSQTFLW*IVILALINLGSRIW 333
           +CG+S TF+W  + LA I    R W
Sbjct: 423 ICGLSTTFIWGSICLAHIQF-RRAW 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,519
Number of Sequences: 5004
Number of extensions: 70141
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)