Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0126
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical pr...    48   6e-06
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate rece...    28   7.3  
U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate rece...    28   7.3  
AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA iono...    28   7.3  

>Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical
           protein F36A2.8 protein.
          Length = 116

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +2

Query: 398 LHKVPKVDIDKSGVFKYILLKVYDQEVDGVEPSTIVLEDIRDGNYHSDIYDEVQGKLIPF 577
           L  +  VDID  GVFKYIL++V D   +  +    V+      ++H DI  E +    P 
Sbjct: 3   LADIADVDIDPKGVFKYILIQVTD---NSTKQQKFVVRGYYRCSFHDDILQETKSS-APS 58

Query: 578 D--CEPWGGGRISHDSRAIKKDTTSMGYS 658
           D   +  GGGRI HD   I KD    GYS
Sbjct: 59  DLKLKCVGGGRIKHDE--IGKDILVYGYS 85


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical protein
            C01B9.1b protein.
          Length = 1671

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 34   ISFRSSH*SQLINVSNQSTLFHFDPHPVFTKQKIQKMRLYSVIPSLFQL 180
            +S  S      I   N  T+FH+ P P+  K KI ++  +    S+ QL
Sbjct: 1370 LSLSSDDAKLCIRQFNSHTIFHYSPQPIGCKLKITELTQFGRFQSMRQL 1418


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical protein
            C01B9.1a protein.
          Length = 1601

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 34   ISFRSSH*SQLINVSNQSTLFHFDPHPVFTKQKIQKMRLYSVIPSLFQL 180
            +S  S      I   N  T+FH+ P P+  K KI ++  +    S+ QL
Sbjct: 1300 LSLSSDDAKLCIRQFNSHTIFHYSPQPIGCKLKITELTQFGRFQSMRQL 1348


>U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform b protein.
          Length = 977

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 534 TLIYMMRYKVN*SPLIVSLGVVVEYLMIPGQLRRIPHLW 650
           TL Y +  K+  +PL VSL + + YL   G+L+++ + W
Sbjct: 837 TLGYGIATKIG-NPLRVSLNLAILYLSEKGELKKLENKW 874


>U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform a protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 534 TLIYMMRYKVN*SPLIVSLGVVVEYLMIPGQLRRIPHLW 650
           TL Y +  K+  +PL VSL + + YL   G+L+++ + W
Sbjct: 768 TLGYGIATKIG-NPLRVSLNLAILYLSEKGELKKLENKW 805


>AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA
           ionotropic glutamate receptorsubunit GLR-2 protein.
          Length = 977

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 534 TLIYMMRYKVN*SPLIVSLGVVVEYLMIPGQLRRIPHLW 650
           TL Y +  K+  +PL VSL + + YL   G+L+++ + W
Sbjct: 837 TLGYGIATKIG-NPLRVSLNLAILYLSEKGELKKLENKW 874


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,007,683
Number of Sequences: 27780
Number of extensions: 380090
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)