Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0126
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.90 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   8.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -1

Query: 584 HNQRG---LIYLVPHHIYQSDSCHLLYPL 507
           HN RG   L  LVPH  +Q  + HLL  L
Sbjct: 92  HNPRGKDALWSLVPHMAWQLSTAHLLAQL 120


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 405 LWSEPDIFVVNCNIGPDKFGFQNLVLFTR 319
           LW+ P IF  +C I    F F     F +
Sbjct: 134 LWTPPAIFKSSCEIDVRYFPFDQQTCFMK 162


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 476 VDGVEPSTIVLEDIRDGNYHSD 541
           ++G E ST  +  I +G YH D
Sbjct: 82  MNGSELSTYNIAGIIEGQYHDD 103


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 542 YQSDSCHLLYPLRQ*W 495
           Y++D C   YP R+ W
Sbjct: 715 YETDPCVRYYPRRKEW 730


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 442 EYSRFINVHFRNFVE*ARHF 383
           EYS  ++ H+R F    +HF
Sbjct: 37  EYSDLVHPHWRAFPAPGKHF 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,062
Number of Sequences: 438
Number of extensions: 4813
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)