Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0126
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    28   5.1  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    28   6.8  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    27   8.9  

>At3g19050.1 68416.m02420 kinesin motor protein-related contains
           Pfam profile: PF00225 Kinesin motor domain; contains
           non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
 Frame = +2

Query: 443 KYILLKVYDQEV-DGVEPSTIVLEDIRDGNYHSDIYD-EVQ 559
           K   L++Y++++ D +EPS+  L+DI+ G Y  ++ + EVQ
Sbjct: 328 KCSFLEIYNEQITDLLEPSSTNLQDIKSGVYVENLTECEVQ 368


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 332 TKFWNPNLSGPILQFTTKMSGSLHKVPKVDIDKSGVFKYILLKVYDQEVDGVEPSTIVLE 511
           T  W  + S  IL     +SGS          +SG F  IL   +DQ V GV  ST+ ++
Sbjct: 242 TSSWPSHGSSIILSGAGCLSGSSSMFTTF-CSESGSFPLILY--FDQAVGGVSSSTVTID 298

Query: 512 DIRDGN 529
               GN
Sbjct: 299 SELKGN 304


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
            similar to SP|O35134 DNA-directed RNA polymerase I
            largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
            subunit) (RPA194) {Mus musculus}; contains InterPro
            accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 347  PNLSGPILQFTTKMSGSLHKVPKVDIDKSGVFKYILLKVYDQEVDGVEPSTIVLEDIRDG 526
            P L G   +    ++  L K+   DI KS     +   VY+ EV  +    I L      
Sbjct: 1214 PLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHY 1273

Query: 527  NYHSDIYDE 553
              H+DI +E
Sbjct: 1274 PKHTDITEE 1282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,957,193
Number of Sequences: 28952
Number of extensions: 350342
Number of successful extensions: 832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)