Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0123
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   3.3  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    26   4.4  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 217 PSSKLRNKYII*IKIHTSILSTD-LFALIQKVNEA*YFHTIS 95
           P  ++R +Y++  KI  S++ +D  F L   V  A +F TIS
Sbjct: 194 PDLRMRRRYLV-YKIFMSLIKSDYYFCLTATVQYAIFFSTIS 234


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 78  SHRSMVNQNNCKQLWLTLCLLIAKF 4
           +H S  N+N+ +Q+W  L   + KF
Sbjct: 137 AHTSKANRNSARQMWAQLMASVRKF 161


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 166 MYEFLFILCIYFSILRKVDESPSKQLLKTTPLV 264
           +Y  L +LCI+F+I   +   PS Q    T LV
Sbjct: 37  LYASLILLCIFFTIFSTMSH-PSLQCFSPTSLV 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,759
Number of Sequences: 5004
Number of extensions: 46029
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)