Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0122
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    29   0.70 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.1  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   3.7  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   8.7  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   8.7  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   8.7  

>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 84  CGFYFHNASITQNLRRAAEKLYEDPIEEVERRL 182
           CG Y  +ASI   +++A    YE  +EEVE++L
Sbjct: 183 CGIYIFDASIFDEIKKA----YERRLEEVEKQL 211


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 347 ESLEDFKETKRIITCPKIIKPARKQRNNGKRICKQKDIRTSLKRKNNELIEFSKNXIM-F 523
           E LED   T +      II+   ++ +N   IC +K+ R  L       +E SKN ++ F
Sbjct: 290 EYLEDIIGTSKY---KPIIEENMQELSNSDDICAEKESRLKLVLSEKAKLEDSKNSVLSF 346

Query: 524 ARRQGIDVGFQNQL 565
            + +      QNQL
Sbjct: 347 LKDENELFMKQNQL 360


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 448 LADSFSIISLFPGRLYNFRAGNDSLSFF 365
           L D  +++S + GR+ NF++G DS S +
Sbjct: 185 LTDEQNMLSAYRGRIANFKSGWDSHSAY 212


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 488 HYSFFLKKSLCLSACRFFFHYFSVSWQA 405
           HY  F+ K +C S  +FF+ +    + A
Sbjct: 141 HYCSFVGKDVCFSNQKFFYQFLFYGFSA 168


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 353  LEDFKETKRII-TCPKIIKPARKQRNNGKRICKQKDI 460
            L D++  K+I+ +C K ++ AR   NN +++ +  D+
Sbjct: 1113 LNDYERLKKIVVSCLKSLEEARHSENNFQKMVRLIDL 1149


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 231 GHVSDHQFYLVGRWLSIISFPPLLWD 154
           G   D + YL G W +    PP+ +D
Sbjct: 762 GGADDTEPYLTGEWSAAFKLPPMPFD 787


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 281 DSSNNSTKDKNVISKYFTRAADESLEDF 364
           D S+ STK        FTR  D S  DF
Sbjct: 366 DESSTSTKSSRTTKTPFTRVGDPSQWDF 393


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 24  TPAGKFGSAIAIGSLLIGAGCGF 92
           +P G+F  A   G  LI AGC F
Sbjct: 145 SPEGQFEKAYEKGKRLIRAGCAF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,129
Number of Sequences: 5004
Number of extensions: 43789
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)