Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0122
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0426 - 22802143-22802667,22804929-22805129 31 0.54
07_03_0225 - 15390364-15390924,15391231-15391288,15392160-153922... 29 2.9
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157... 29 3.8
11_06_0110 + 20212221-20214011,20214072-20214368 28 5.0
09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912... 28 5.0
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623... 28 5.0
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 28 6.7
02_04_0429 - 22825104-22825133,22825250-22826147,22827281-22827696 28 6.7
02_04_0423 - 22776007-22776340,22776488-22777051,22777196-22777605 27 8.8
>02_04_0426 - 22802143-22802667,22804929-22805129
Length = 241
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 295 IITTITHSLFIRPMGRSYPSIRARI*SPVLFGR-PLAI 185
++T + + +RPM RS+ S A SP +FGR PL I
Sbjct: 186 LLTATSTARSVRPMWRSFESAMANFPSPAVFGREPLVI 223
>07_03_0225 -
15390364-15390924,15391231-15391288,15392160-15392238,
15392354-15393167
Length = 503
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 234 LGHVSDHQFYLVGRWLSIISFPPLLWDPHIIFLQL 130
+GH+++ QF V R+ + FPPL PH+ FL++
Sbjct: 285 IGHLTNLQFLNVKRFC--LKFPPLGQLPHLTFLKI 317
>06_03_0714 -
23814826-23814997,23815080-23815164,23815680-23815791,
23817203-23817304,23817375-23817447,23817918-23817997,
23818076-23818267,23818945-23819064,23819157-23819244,
23819319-23819353,23819447-23819518,23819860-23819931,
23820054-23821189,23822011-23822362
Length = 896
Score = 28.7 bits (61), Expect = 3.8
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +2
Query: 314 VISKYFTRAADESLEDFKETKRIITCPKIIKPARKQ--RNNGKRICKQK----DIRTSLK 475
+I K RA SLE F TK I+C IK A +Q N RI Q+ + +K
Sbjct: 640 MIKKKVERARS-SLESFCNTKGDISCDDFIKAAEQQLEMRNQCRIINQQARLWKLNDLVK 698
Query: 476 RKNNELIEFSKNXIMFAR 529
R+N I + ++F R
Sbjct: 699 RENKRDIVLNYCSLLFQR 716
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 217 SPVLFGR-PLAINNLLSTSSMGSSYNFSAARR-RFCVMLA 104
S L+G P A+ N+LS + SYN S +++ C+M A
Sbjct: 285 STSLYGEIPQALGNMLSLQVLDFSYNMSVSKKGNMCIMKA 324
>09_04_0348 -
16890842-16890925,16890942-16891019,16891079-16891266,
16891414-16891537
Length = 157
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Frame = +2
Query: 278 CDSSNNSTKDKNVISKYFTRAADESLEDFKETKRIITCP---------KIIKPARKQRNN 430
C+ + K+ KY +R + + ED + +TCP +++PAR+Q N
Sbjct: 26 CNFKRVANKELAATEKY-SRRSSKDCEDLDSIE--LTCPLCRGEVKGYTLVEPAREQLNQ 82
Query: 431 GKRICKQ 451
KR C Q
Sbjct: 83 NKRSCMQ 89
>02_05_1225 +
35060642-35060815,35061254-35061802,35062284-35062348,
35062417-35062957,35063321-35064610
Length = 872
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = +2
Query: 281 DSSNNSTKDKNVISKYFTRA-----ADESLEDFKETK-RIITCPKIIKPARKQRNNGKRI 442
D++ +S ++ FTR +D +ED T I PK+I+ R + NG+
Sbjct: 282 DANQSSIPEEGTPVSEFTRVLETSESDARVEDSNRTPVDAIEVPKVIEVKRDEHGNGQTN 341
Query: 443 CKQ---KDIRTSLKRKNN 487
C Q K+I +L + N
Sbjct: 342 CLQSPRKNINVNLLKPTN 359
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 75 GAGCGFYFHNASITQNLRRAAEKLYEDPIEEVERRLLI 188
G CGFY N + + RR + EDP + R+ LI
Sbjct: 812 GVDCGFYVFNFMVNYDGRRLLNPITEDPY-YLRRQFLI 848
>02_04_0429 - 22825104-22825133,22825250-22826147,22827281-22827696
Length = 447
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 262 RPMGRSYPSIRARI*SPVLFGR-PLAI 185
RPM RS+ S A SP +FGR PL +
Sbjct: 272 RPMWRSFESAMASFPSPAVFGREPLVV 298
>02_04_0423 - 22776007-22776340,22776488-22777051,22777196-22777605
Length = 435
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 271 LFIRPMGRSYPSIRARI*SPVLFGR-PLAI 185
L +RPM RS+ + A + SP +FGR P+ +
Sbjct: 268 LSLRPMWRSFETSIANLPSPAVFGREPIVV 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,232,560
Number of Sequences: 37544
Number of extensions: 266822
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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