Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0122
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-6|AAK31489.2|  520|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70752-2|CAA94757.2|  366|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    28   6.0  
AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical p...    27   7.9  

>U23139-6|AAK31489.2|  520|Caenorhabditis elegans Hypothetical
           protein F13H8.8 protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +2

Query: 305 DKNVISKYFTRAADESLEDFKE--TKRIITCPKIIKPARKQRNNGKRICKQKDIRTSLKR 478
           D+N+  +   R+A+ SLED +E   K     P I++P  ++R   +R+ +++  R S  R
Sbjct: 2   DQNINDQNRKRSANLSLEDNREPKDKSKRELPPILRPKFEKRRRRRRL-RKRTSRDSASR 60

Query: 479 KNNELIE 499
            + E IE
Sbjct: 61  DDMESIE 67


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 189 LSIISFPPLLWDPHIIFLQLDEDSVLCSHY 100
           + I+ FP LL  PH +FL L  +S++ S++
Sbjct: 148 IKIVCFPSLLNFPHNLFLSLVSNSMIFSYF 177


>Z70752-2|CAA94757.2|  366|Caenorhabditis elegans Hypothetical
           protein F25B3.5 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 108 SITQNLRRAAEKLYEDPIEEVERRLLIASGL 200
           SIT++++ + EK +  P    +RR+LIAS L
Sbjct: 4   SITKSIQSSIEKFHASPTPIKKRRILIASPL 34


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 359 DFKETKRIITCPKII---KPARKQRNNGKRICKQKD 457
           D KET++++  P +    K  RKQR N  R  KQKD
Sbjct: 167 DSKETEKLVEAPAVAMEKKKQRKQRKNKNR--KQKD 200


>AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical
           protein C07H6.4 protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 284 SSNNSTKDKNVISKYFTRAADESLEDFKETKRIITCPKIIKPARK 418
           +SN  +KD +   K     A   LED   +K++   PK++ P  +
Sbjct: 75  TSNVGSKDFDEAKKLAAAKARRMLEDVARSKKMTEVPKVVVPTTR 119


>Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical
           protein T04A8.15 protein.
          Length = 718

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +2

Query: 248 APHRPDK*RMCDSSNNSTKDKNVISKY--FTRAADESLEDFKETKRIITCPK-IIKPARK 418
           AP RP K     S   +  DKNV S +   T + D+     K+  +  TC + +      
Sbjct: 18  APRRPQKLGSVQSIVRNESDKNVPSPFEEITLSDDDEEAPAKKPVKCATCARDMTLWMNS 77

Query: 419 QRNNGKRIC--KQKDIRTSLKRKNNELIE 499
           +R+   ++C  KQ +      RK+  L E
Sbjct: 78  RRDIHVKVCKAKQSEKEKETTRKSKTLTE 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,453
Number of Sequences: 27780
Number of extensions: 246251
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)