Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0121
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   3.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   3.7  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   3.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.5  

>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 307 NDEEYCGDYDQFDLANEVDTLEQFLKL 387
           N E     YD +D  ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +2

Query: 8   YFSDLIVFREDICHFTILKNTLSNMVVKIYISGIS 112
           YF+DLI+F  D   + I+ NT+ + V++ ++ GIS
Sbjct: 746 YFTDLILFFLDTYLWYIIFNTIFS-VLRSFVLGIS 779


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +3

Query: 501 KSRNDEADTIETSEKVKETSPVKENSPL*RKLK 599
           ++ NDE DT +TSEK KET    + +PL  KLK
Sbjct: 69  ENENDE-DTEQTSEK-KETEETPKENPL-EKLK 98


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 301 SAAAVVNAGSGH*RCHRRFSIVLHEIFIGLSPWFRYVDDFIFYIF*V*NHQDPLLTFLHL 122
           S ++ +N  + H  C +   ++L   F     WF   +  I  I+ V  H D L T + L
Sbjct: 731 SGSSNINFPNSHTLCQKLCMLLLRPSFS--EEWFGLEEQAIEAIYAVAKHPDELCTNIIL 788

Query: 121 LVAR 110
           L+ +
Sbjct: 789 LLTK 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,493
Number of Sequences: 5004
Number of extensions: 33522
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)