Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0121
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41...    33   0.13 
08_02_1454 - 27222004-27222296,27222389-27222500                       31   0.53 
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666...    27   8.7  

>01_01_0055 -
           415666-415767,416510-416602,416776-416850,416920-417071,
           417147-417267,417567-418289,418408-418489,418575-418681,
           418757-418822,418941-419057,419157-419402
          Length = 627

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 86  VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNN-AKSSVA 259
           +K++ISG+  NKE    +  V +  +  N++ +  ++  PG+ SD+D      AK  VA
Sbjct: 361 MKLFISGVVHNKEDAGAKSYVRVPAEINNLEKDSFELYIPGKGSDRDLADTKAAKQKVA 419


>08_02_1454 - 27222004-27222296,27222389-27222500
          Length = 134

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 256 GTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEV-DTLEQF 378
           G    P  R  LPPQ  ++ + CGD+   DL +EV + L+QF
Sbjct: 17  GVAKKPISRKKLPPQNCSESQDCGDH---DLGDEVEEQLQQF 55


>02_02_0089 -
           6668179-6668316,6668386-6668565,6668648-6668729,
           6669317-6669405,6669503-6669580,6670502-6670559,
           6670727-6670956,6671174-6671318,6671417-6671458,
           6671681-6671853
          Length = 404

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +1

Query: 274 NPRSPLPPQMFNDEEY----CGDYDQFDLANEVDTLEQFLKL 387
           NPR+  P Q+FN+E +     GD  + D      T+E FL++
Sbjct: 95  NPRNNYPAQVFNNENHQLNLYGDNVEVDYRGYEVTVENFLRV 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,277
Number of Sequences: 37544
Number of extensions: 211286
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)