Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0121
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           33   0.23 
SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        29   3.8  
SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +1

Query: 274 NPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 387
           N  + LPPQ+FN E+YCG YD+   ANE  TLE+FLKL
Sbjct: 58  NDETALPPQIFNGEQYCGGYDELFNANEDGTLEEFLKL 95



 Score = 35.1 bits (77), Expect = 0.044
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +2

Query: 86  VKIYISGISGNKEVKKRQQRVLMILDS-KNIKYEVIDITEPGRESDKDFMQNNAKSSVAP 262
           + +YIS  S N ++KK+Q  + M+L S  +I+ EV+DI+      DK     N ++++ P
Sbjct: 6   ITVYISRQSANNQMKKQQNWIDMVLKSVTDIEVEVVDISVDPELKDKMRALMNDETALPP 65


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 238  QC*IFCGTVSDPNPRSPLPPQMFNDEE 318
            +C + CGT++DPNP+ P  P    +++
Sbjct: 1306 RCALTCGTITDPNPKDPYIPDKLPEDD 1332


>SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 282 TRVRVTDGATEDLALFCMKSLSDSLPGSVM-SMTSYFIFFESKIIRTRC*RFFTS 121
           T+ R+T+  T   +       S   P S++ S  S FIF E  IIR  C R   S
Sbjct: 17  TKSRMTNARTHSTSASIQGDASPLTPASIITSNRSLFIFSEKNIIRRFCKRIVES 71


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 262 VSDPNPRSPLPPQMFNDEEYCGDYDQF 342
           ++D  P  P+PP +F+D++   D D F
Sbjct: 494 LTDEPPSKPIPPPLFDDDDEDDDIDWF 520


>SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1057

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 267 TDGATEDLALFCMKSLSDSLPGSVMSMTSY--FIFFESKIIR 148
           T G+ E+  +  + + SDS P  V+ +T Y  ++ F+S + R
Sbjct: 682 TKGSVEEAIVVLLDNKSDSTPCDVIDLTKYGKYVVFKSCVTR 723


>SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 279 RVRVTDGATEDLALFCMKSLSDSLPGSVMSMTSYFIFFESKIIR 148
           R R++D     L+++C   L   + G++ + TSYF      + R
Sbjct: 273 RERLSDAWNSALSIYCKSGLIADIFGTLFASTSYFFLVTISVER 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,512
Number of Sequences: 59808
Number of extensions: 237313
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)