Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0121
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 246 LALFCMKSLSDSLPGSVMSMTSYFIFFESKIIRTRC*RFFTSLL 115
           L LFC+  +   +P + + M +  +F+E  +         TS+L
Sbjct: 284 LHLFCLLDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSIL 327


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 83  VVKIYISGISGNKEVKK 133
           +V + ISG SGN + K+
Sbjct: 11  IVLVLISGCSGNPDAKR 27


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 64  KYLIKHGCQNLYQW 105
           KY ++ GC+  +QW
Sbjct: 405 KYDVRDGCRTPFQW 418


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 100  QWHFWQQGGEETS 138
            QW  W   GEE S
Sbjct: 1019 QWKIWPMKGEEKS 1031


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,891
Number of Sequences: 438
Number of extensions: 2138
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)