Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0120
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   7.9  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 103  PLVLRELHLISHNRETF 53
            PL+  E+H ++ N ETF
Sbjct: 1179 PLIRGEVHYLNRNEETF 1195


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 103  PLVLRELHLISHNRETF 53
            PL+  E+H ++ N ETF
Sbjct: 1179 PLIRGEVHYLNRNEETF 1195


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 312 LHAFTQRQQLQTARQELSHALYQHDAACR 398
           L  +  R Q+    Q+   ++YQHD   R
Sbjct: 485 LPPYPNRTQITEVTQQTEPSIYQHDQLLR 513


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 476 QHPKHHTP 499
           QHP+HH P
Sbjct: 174 QHPQHHQP 181


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 476 QHPKHHTP 499
           QHP+HH P
Sbjct: 176 QHPQHHQP 183


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 505 PPWGVVLGVLQCPAC 461
           P  GV +GVL C  C
Sbjct: 51  PDLGVPIGVLYCMKC 65


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 443 PRHTETAGRALQHPKHHT 496
           PRH       L HP H T
Sbjct: 32  PRHFNPPSDKLHHPIHQT 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,195
Number of Sequences: 336
Number of extensions: 2713
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)