Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0120
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    66   5e-12
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   1.6  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    26   3.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   8.4  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   8.4  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    25   8.4  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 35/69 (50%), Positives = 42/69 (60%)
 Frame = +3

Query: 276 LKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 455
           L   Q+EWD++ L  F  R+ L   +QELS ALY  DAA RVI+RLTKE   AREALA  
Sbjct: 73  LSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTKERDEAREALAKF 132

Query: 456 KPQAGHCST 482
               G  S+
Sbjct: 133 SDNIGTVSS 141



 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +1

Query: 61  LYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
           ++C+IS         S  SG V+E+R+IE+ I E   DP+  +E  +EDL
Sbjct: 1   MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDL 50


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 124 VFERRIIEKYIIENGVDPINGKELRVEDL 210
           +F+ R I  ++ ++G +PING++  + DL
Sbjct: 67  IFDFRFIVPWLRKHGTNPINGQKASMSDL 95


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 485 KHHTPXXXXXQCGSNRHVCGRGVSSAG 565
           ++ TP      CGS+  + GRGV  AG
Sbjct: 213 QYRTPEEVIVNCGSDIIIVGRGVYGAG 239


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 59  LSIVRY--QMKFPKYQWYHLRQELCLKG 136
           +S+V Y  Q+ FPK  W H+   L L G
Sbjct: 664 VSVVVYLLQISFPKSSWKHVNPALLLGG 691


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 53  KCLSIVRYQMK-FPKYQWYHLRQELCLKGESLR 148
           K LSI R   + F K++W  L ++L   G SLR
Sbjct: 338 KTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLR 370


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 74  YQMKF-PKYQWYHLRQELCLKGESLRS 151
           + MK+ PK++W+HL +++  +  +  S
Sbjct: 213 WNMKYLPKFKWHHLTEQIAAENAARES 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,658
Number of Sequences: 5004
Number of extensions: 42255
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)