Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0120
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0316 - 16688911-16689044,16689141-16689211,16689303-166893...    85   5e-17
04_03_0896 - 20636473-20636979                                         29   2.1  
12_02_1188 + 26801833-26802225                                         29   2.8  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    29   2.8  
01_07_0139 - 41385823-41386656                                         29   3.7  
11_06_0704 - 26450916-26451128,26451439-26451831                       28   6.5  
11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121     27   8.6  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    27   8.6  

>10_08_0316 -
           16688911-16689044,16689141-16689211,16689303-16689354,
           16689589-16689685,16689764-16689841,16689938-16690054,
           16690172-16690276,16691026-16691100,16691297-16691356,
           16691454-16691549,16691838-16691954,16692142-16692260,
           16692349-16692490,16694204-16694290,16694852-16694914,
           16695081-16695161
          Length = 497

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 42/63 (66%), Positives = 46/63 (73%)
 Frame = +3

Query: 276 LKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 455
           L   Q+EWDA+ML +F   QQL TARQELSHALYQHDAACRVIARL KE   AR  LA  
Sbjct: 43  LGMFQNEWDAIMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARALLAQA 102

Query: 456 KPQ 464
           + Q
Sbjct: 103 ERQ 105


>04_03_0896 - 20636473-20636979
          Length = 168

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
 Frame = +3

Query: 330 RQQLQTARQELSHALYQHDAACRVIA--RLTKEVTAAREALATL-------KPQAGHCST 482
           R  L TA     HA  +  A  RV+   RL+   TAA  A+AT        + +A    +
Sbjct: 71  RSSLPTAASSPVHATLELVAGVRVLLAPRLSTPATAASPAVATTHVHKLQRRARAARQHS 130

Query: 483 PSTT---PHGGVEXSAGATGMSADVVSRLQXS 569
            S T   PH  +  SAGA+  S  V   L  S
Sbjct: 131 TSATAAKPHASLPSSAGASSCSTTVSQYLAFS 162


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 353 TRIKSCIVPTRRSVSCDSPTHKGGDGGARGPRHTETAGRALQHPKHHTP 499
           +R+  C  P+       +P   GG GG+ G R +  A      P+ H P
Sbjct: 9   SRVGDCSSPSSPPPFSPAPRRGGGGGGSSGKRSSSAAAAHEGVPEGHVP 57


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 52  KMSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
           ++  YC                G+VF+   I  YI + G  P+ G  L+ EDL
Sbjct: 36  RLPFYCCALTFLPFEDPVCTADGSVFDLMSIIPYIKKFGKHPVTGTPLKQEDL 88


>01_07_0139 - 41385823-41386656
          Length = 277

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 492 WCLGCCNARPAVSVWRGPLAPPS 424
           WCLGC +AR   S WR     PS
Sbjct: 248 WCLGCTSARGRGSPWRTSGRRPS 270


>11_06_0704 - 26450916-26451128,26451439-26451831
          Length = 201

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 498 GVWCLGCCNARPAVSVWRGPLAP 430
           GVWC    +ARP  + W+ P  P
Sbjct: 43  GVWCCEEADARPLSAQWQPPATP 65


>11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121
          Length = 196

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 273 WQGLMWPWRFWL 238
           W  L+WPWR W+
Sbjct: 134 WMWLIWPWRRWI 145


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 252 WRFWLYYRWCFDLNKVLNSQLLAVNRIHAIFYYVLLNDSPF 130
           +RFWL +   F +    +  +L    +H  FYYVL  ++ +
Sbjct: 153 YRFWLLWNSAFRVT--YSRMMLYTTPVHGTFYYVLRYEAEY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,493
Number of Sequences: 37544
Number of extensions: 344784
Number of successful extensions: 1307
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)