Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0120
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...   110   6e-25
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    29   1.9  

>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score =  110 bits (265), Expect = 6e-25
 Identities = 56/104 (53%), Positives = 76/104 (73%)
 Frame = +3

Query: 276 LKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 455
           LK +QDEWD +ML++F+ RQQLQ ARQELSH+LYQHDAACRVI+RL+KE+TAAREAL+TL
Sbjct: 76  LKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAAREALSTL 135

Query: 456 KPQAGHCSTPSTTPHGGVEXSAGATGMSADVVSRLQXSATALHA 587
           KP   H S         ++ S    G+S  ++++L+  + +L A
Sbjct: 136 KP---HTSA-KVDDDVSIDESEDQQGLSEAILAKLEEKSKSLTA 175



 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +1

Query: 55  MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
           MS  C IS         S  SG +F+RR+I K+I ENG DPI+  EL  + L
Sbjct: 1   MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQL 52


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 115 SGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
           S +V +  ++EK I  +G+DPING+ +  +D+
Sbjct: 251 SKSVVKYDVVEKLIKGDGIDPINGEPMSEDDI 282


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 276 VWQGL-MWP--WRFWLYYRWCFDLNKVLNSQLLAVNRIHAIFYYVL 148
           +WQ L ++P  WR+W+Y +W  + ++     ++   +IH    YVL
Sbjct: 490 IWQLLELFPYSWRYWMYSKWNLETSRHPEMHIMK-GKIHGRTKYVL 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,428
Number of Sequences: 27780
Number of extensions: 269123
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)