Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0120
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 249 RFWLYYRWCFDLNKVLNSQLLAVNRIHAI 163
           + WL   W F+L K   +Q+  +  IH +
Sbjct: 226 KIWLRPDWLFNLTKYGKNQIKLLEIIHGL 254


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 382 CWYNA*LNSCLAVCNCC 332
           C Y A    C A+C+CC
Sbjct: 737 CRYEA---HCFALCHCC 750


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 381 HDAACRVIARLTKEVTAAREALATLKPQAG 470
           H   CR + RLT++V  +  A   +    G
Sbjct: 205 HGYRCRTMHRLTRQVVVSSVANVRIADHRG 234


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 381 HDAACRVIARLTKEVTAAREALATLKPQAG 470
           H   CR + RLT++V  +  A   +    G
Sbjct: 205 HGYRCRTMHRLTRQVVVSSVANVRIADHRG 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,931
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)