Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0120
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 83 1e-16
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 83 1e-16
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 83 1e-16
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 29 3.1
At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa... 29 3.1
At5g52020.1 68418.m06455 AP2 domain-containing protein low simil... 28 4.1
At5g53080.1 68418.m06594 kinesin light chain-related low similar... 28 5.4
At4g36260.1 68417.m05157 zinc finger protein-related similar to ... 28 5.4
At5g55060.1 68418.m06862 expressed protein 27 9.5
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 83.0 bits (196), Expect = 1e-16
Identities = 40/61 (65%), Positives = 46/61 (75%)
Frame = +3
Query: 276 LKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 455
L + Q+EWD LML F QQL TARQELSHALYQHD+ACRVIARL KE AR+ LA +
Sbjct: 73 LGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEV 132
Query: 456 K 458
+
Sbjct: 133 E 133
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 67 CAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
CAIS S SG +FERR+IE++I + G P+ G+ L ++D+
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDI 50
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 83.0 bits (196), Expect = 1e-16
Identities = 40/61 (65%), Positives = 46/61 (75%)
Frame = +3
Query: 276 LKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 455
L + Q+EWD LML F QQL TARQELSHALYQHD+ACRVIARL KE AR+ LA +
Sbjct: 73 LGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEV 132
Query: 456 K 458
+
Sbjct: 133 E 133
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 67 CAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
CAIS S SG +FERR+IE++I + G P+ G+ L ++D+
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDI 50
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 83.0 bits (196), Expect = 1e-16
Identities = 41/63 (65%), Positives = 46/63 (73%)
Frame = +3
Query: 276 LKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 455
L + Q EWD+LML F QQL TARQELSHALYQHDAACRVIARL KE +R+ LA
Sbjct: 73 LGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRQLLAEA 132
Query: 456 KPQ 464
+ Q
Sbjct: 133 ERQ 135
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 67 CAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
CAIS S SG ++E+R+I+ +I + G P+ G+ ++D+
Sbjct: 3 CAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDI 50
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 64 YCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 210
YC G+VFE I YI + G P+ G L+ EDL
Sbjct: 40 YCCALTFLPFEDPVCTIDGSVFEITTIVPYIRKFGKHPVTGAPLKGEDL 88
>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
to hin1 GB:CAA68848 [Nicotiana tabacum]
Length = 240
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 364 LNSCLAVCNCCLCVKACNI 308
L SCL C CC+ CNI
Sbjct: 40 LGSCLRCCGCCILSLICNI 58
>At5g52020.1 68418.m06455 AP2 domain-containing protein low
similarity to DREB1B GI:3738226 from [Arabidopsis
thaliana]; contains Pfam profile PF00847: AP2 domain
Length = 232
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +3
Query: 411 LTKEVTAAREALATL----KPQA--GHCSTPSTTPHGGVEXSAGATGMS 539
+ +E T +RE TL PQ G S+PS P GG ATG+S
Sbjct: 11 VNQETTTSREVSITLPTDQSPQTSPGSSSSPSPRPSGGSPARRTATGLS 59
>At5g53080.1 68418.m06594 kinesin light chain-related low similarity
to kinesin light chain from [Plectonema boryanum]
GI:2645229, [Loligo pealei] GI:403179; contains Pfam
profile PF00515: TPR Domain
Length = 564
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +3
Query: 399 VIARLTKEVTAAREALATLKPQAGHCSTPSTTPHGGVEXSAGATGMSADVVSRLQXSATA 578
VI + + + A+ L+ + G C+T TP G+ S + G + + + + T
Sbjct: 198 VIGKFENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTI 257
Query: 579 LHAGXG 596
L G
Sbjct: 258 LERNRG 263
>At4g36260.1 68417.m05157 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01624: LRP1 C-terminal
domain, TIGR01623: putative zinc finger domain, LRP1
type
Length = 322
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/63 (25%), Positives = 20/63 (31%)
Frame = +2
Query: 344 DC*TRIKSCIVPTRRSVSCDSPTHKGGDGGARGPRHTETAGRALQHPKHHTPXXXXXQCG 523
DC T ++S +P R H GG G G PK H
Sbjct: 120 DCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSS 179
Query: 524 SNR 532
S+R
Sbjct: 180 SSR 182
>At5g55060.1 68418.m06862 expressed protein
Length = 645
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 364 LNSCLAVCNCCLCVKACNIRASHS 293
L+ L V NCCL KA N+ AS +
Sbjct: 266 LHQWLQVINCCLARKARNVAASEA 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,563,570
Number of Sequences: 28952
Number of extensions: 243355
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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