Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0117
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...   134   9e-33
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    29   0.63 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.5  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.9  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   7.8  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   7.8  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   7.8  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  134 bits (325), Expect = 9e-33
 Identities = 65/111 (58%), Positives = 75/111 (67%)
 Frame = +2

Query: 224 GFHWKAGYLPRQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVP 403
           GF  K G    Q A+DYGTKVVGG +PKKAGT HLGKPVFGT++EA   T A AS ++VP
Sbjct: 47  GFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVP 106

Query: 404 PPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKMPFLRQNKSRLVGPNC 556
           PP             +PLIV ITEG+PQHDM+RV      Q+KSRLVGPNC
Sbjct: 107 PPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNC 157



 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 2/168 (1%)
 Frame = +3

Query: 108 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHANKPLTMVLKL 287
           L +F    +L N    S + Y +T  NL++ S+TKVI QGFTGKQGTFHA   +    K+
Sbjct: 12  LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKV 67

Query: 288 LEECHQRRLVQNILVSLCLVQSKRQRQAQXXXXXXXXXXXXXXXXPF*KLLRLKCPSLCA 467
           +   + ++     L        +   +                     + +  + P + A
Sbjct: 68  VGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVA 127

Query: 468 LQKVC--HNMIWCE*KCPS*DKTSLDWLVLTVPGIIAPEKCKIGIMAS 605
           + +    H+M+       +  K+ L  +    PGII P +CKIGIM S
Sbjct: 128 ITEGIPQHDMLRVSDILKTQSKSRL--VGPNCPGIIRPGQCKIGIMPS 173


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +2

Query: 467  ITEGVPQHDMVRVKMPFLRQNKSRL 541
            ITEGV   D+++VKMPFLR++  R+
Sbjct: 1028 ITEGV---DLMQVKMPFLRRSLQRI 1049


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 375 PVPAFASLTVPNTGLPRCSVPAFFGDTPPTTLVP 274
           P+P++ + ++PN G+P  ++P      P T  +P
Sbjct: 124 PLPSYNTASLPNAGIP-AAMPGMPSGYPGTVPIP 156


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 54  PFRRFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 173
           PF    F N T  +PV  +S+  +G +   N   +   P+A
Sbjct: 33  PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 485 QHDMVRVKMPFLRQNKSRLVGPNCSWYHCSR 577
           Q  +VR+K+ +LRQ     + PN   Y CSR
Sbjct: 700 QKTVVRLKIQYLRQINDPALQPNIEQY-CSR 729


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 553 LFLVSLLPRSVKLVSWPAAVHKRGXH 630
           +FL + LP +++   W + +HK+  H
Sbjct: 266 IFLSATLPNALQFARWISEIHKQPCH 291


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 151 NRTLPSFSPSLNLERTRTGIAIVELLNVNL 62
           NR  PS+S SLN   T   ++ VE +N +L
Sbjct: 297 NRAPPSYSFSLNCSHTYQPVSCVEPVNHDL 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,583
Number of Sequences: 5004
Number of extensions: 59034
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)