Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0117
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   138   4e-33
04_04_1339 + 32760424-32760584,32762428-32764462                       33   0.28 
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40...    31   1.1  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  138 bits (334), Expect = 4e-33
 Identities = 64/113 (56%), Positives = 78/113 (69%)
 Frame = +2

Query: 218 CSGFHWKAGYLPRQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIY 397
           C G   K G    +QA++YGT +VGGV+PKK GTEHLG PVF +V EAKA T A ASVIY
Sbjct: 47  CQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIY 106

Query: 398 VPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKMPFLRQNKSRLVGPNC 556
           VPPP             + L+VCITEG+PQHDMV+VK    +Q+K+RL+GPNC
Sbjct: 107 VPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNC 159



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 LILTSETKVIVQGFTGKQGTFHANKPL 269
           + +   T+VI QG TGK GTFH  + +
Sbjct: 37  VFVDKSTRVICQGITGKNGTFHTEQAI 63


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 51  FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 191
           F  RR   N ST  M V +L    DGL  G++  A+G P+A+ ++ L
Sbjct: 550 FGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596


>06_01_0041 +
           403634-403817,404154-404332,404431-404536,404620-404936,
           405231-405605,406199-406283,406570-408066,408575-408738
          Length = 968

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 242 GYLPRQQALDYGTKVVGGVSPKKAGT 319
           GY P +Q L +GT +  GV+PK++GT
Sbjct: 656 GYYPGEQVLPFGT-IKDGVAPKESGT 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,365
Number of Sequences: 37544
Number of extensions: 402504
Number of successful extensions: 1075
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)