Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0114
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   5.0  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   8.8  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   8.8  

>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 302 YDAK*IMFLHVSVPCANLPPLR 367
           Y A  + FL+ S+P A+LPPLR
Sbjct: 214 YPAIVVPFLNGSLPQADLPPLR 235


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = -2

Query: 488 QNQFK*SNQIESNWNRIGFTSGSITETNRYNSRQTS*AFVDVVGVSSRMVHSRAKTLFTL 309
           Q   K SN+ ++  ++   T+ S  ET   +S      F  VVG+        A  LF +
Sbjct: 224 QKSSKPSNE-DNVEDKKDITNDSSKETAEKSSSDE--LFSAVVGLQEEEDDEDAVHLFEI 280

Query: 308 RHNAIKLLKSTYYVFIYILLE 246
           +H++++ +K       Y LLE
Sbjct: 281 KHSSVETIKKRCAEIDYPLLE 301


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +1

Query: 337 CTMRELTPTTSTNAQEVCRLLYLFVSVIDPL---VNPIRFQ 450
           C +  +TP    +  E C+  +LF  +  P    V PIR Q
Sbjct: 142 CDLLNVTPKNIVSITEQCKFSFLFAPMCHPTLKNVAPIRKQ 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,079
Number of Sequences: 5004
Number of extensions: 30824
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)