Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0114
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 123 TSFASTEPRPGNSSSFDLI 179
           TS  ST PRP +S++  L+
Sbjct: 835 TSSTSTSPRPASSTAATLV 853


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 374 FVDVVGVSSRMVHSRAKTLFTLRHNAIKLLKS 279
           F D++   S+  ++RA  LFT   +A  +L++
Sbjct: 184 FDDIIQRLSKKANARAVVLFTRAEDARGILEA 215


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 374 FVDVVGVSSRMVHSRAKTLFTLRHNAIKLLKS 279
           F D++   S+  ++RA  LFT   +A  +L++
Sbjct: 274 FDDIIQRLSKKANARAVVLFTRAEDARGILEA 305


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 348 RTYPHYVDKCSRSLPAIIPIR 410
           ++YP+Y+DK ++ +   I  R
Sbjct: 455 KSYPNYIDKETKDMNLEISTR 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,799
Number of Sequences: 438
Number of extensions: 2022
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)