Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0110
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 124 7e-30
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 2.7
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 3.5
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 4.7
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 6.2
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 8.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 8.1
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 25 8.1
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 124 bits (300), Expect = 7e-30
Identities = 56/81 (69%), Positives = 70/81 (86%)
Frame = +3
Query: 267 EVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 446
+V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF
Sbjct: 68 QVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLF 127
Query: 447 IIDDKQNLRQITINDLPVGRS 509
+ID K LRQITINDLPVGRS
Sbjct: 128 LIDPKGVLRQITINDLPVGRS 148
Score = 101 bits (241), Expect = 1e-22
Identities = 46/68 (67%), Positives = 54/68 (79%)
Frame = +1
Query: 67 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 246
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 247 EFRRSAAR 270
+F A+
Sbjct: 61 KFAERNAQ 68
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 88 PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 219
P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = +1
Query: 25 SVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLSDYKGKYVVLF 180
S F+Y SF++ T +P+ TA+ FK + YK F
Sbjct: 36 SSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTTSYKD-----F 90
Query: 181 FYPLDFTFVCPTEIIAFSEKADEFRRSA 264
+ D+T PT + S+ DEF + +
Sbjct: 91 VFSRDYTNWTPTFWVLLSQLIDEFLKES 118
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 139 ISLSDYKGKYVVLFFYP-LDFTFVCPTEIIAFSEKADEFRRSAA 267
++L D +YV+LF+ P D F+ II + +E RSAA
Sbjct: 594 LALIDLVSQYVILFYEPDFDSIFLRRVLIILCKKLQEEPTRSAA 637
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 518 SPPRPPHGQVVDGD 477
SPP P H V+DGD
Sbjct: 968 SPPSPKHAIVIDGD 981
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 329 QAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 493
+A R+ H H + + H R S G H +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 494 QVVDGDL-PEVLLVVDDEESSEGDARLLVQ 408
++ D DL PEV ++ +EES G++R L++
Sbjct: 129 EIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 43 SKVFSFNKMPLQMTKPAPQFKATAVVN 123
S +FSFN TKP+P +T N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 336 GGLGPMNIPLISDKS 380
GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 216 GDHRVLGEGGRVPKIGCEVLGASTDSHFT 302
G H +LG GG V G +++ + H T
Sbjct: 277 GTHAILGNGGLVTYSGAQLVAQAARHHAT 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,460
Number of Sequences: 5004
Number of extensions: 41198
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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